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geneontology
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pathways2GO
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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PKA-mediated phosphorylation of key metabolic factors (R-HSA-163358)
#218
ukemi
opened
1 year ago
0
glucose metabolism patches
#217
deustp01
closed
4 months ago
1
Glucagon signaling in metabolic regulation ( R-HSA-163359) and PKA activation in glucagon signalling (R-HSA-164378)
#216
ukemi
opened
1 year ago
0
Reactome Release #85
#215
ukemi
closed
10 months ago
26
Generating manuscript stats for #213
#214
dustine32
closed
9 months ago
1
Generate stats for GO-CAM completeness used in manuscript
#213
dustine32
opened
1 year ago
0
Insulin effects increased synthesis of Xylulose-5-Phosphate (R-HSA-163754)
#212
ukemi
opened
1 year ago
0
Vitamin C (ascorbate) metabolism (R-HSA-196836)
#211
ukemi
opened
1 year ago
0
Emit supplied base_contributor for #126
#210
dustine32
closed
1 year ago
0
Pyruvate metabolism (R-HSA-70268)
#209
ukemi
closed
4 months ago
1
Citric acid cycle (TCA cycle) - imported from: Reactome (R-HSA-71403)
#208
ukemi
closed
4 months ago
15
Terminal pathway of complement (R-HSA-166665)
#207
ukemi
opened
1 year ago
0
Recursive drug tests required for sets and complexes for #182
#206
dustine32
closed
1 year ago
2
Adrenaline,noradrenaline inhibits insulin secretion (R-HSA-400042)
#205
ukemi
opened
1 year ago
1
Change the representation of regulatory reactions to use 'has_small_molecule_regulator' activity
#204
ukemi
closed
10 months ago
8
There is a bug importing co-transporters and antiporters
#203
ukemi
closed
1 year ago
3
Remove (don't load) models that are a single node
#202
ukemi
opened
1 year ago
4
Glucagon-type ligand receptors ( R-HSA-420092)
#201
ukemi
opened
1 year ago
0
Change all 'transports_or_maintains_localization_of' relations to 'has_primary_input'
#200
ukemi
closed
1 year ago
11
Should we just do a general update the whole insulin receptor recycling pathway (R-HSA-77387)?
#199
deustp01
opened
1 year ago
1
Skip Reactome reactions that contain the word 'dissociates' in the label
#198
ukemi
closed
9 months ago
5
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion (R-HSA-381676)
#197
ukemi
opened
1 year ago
0
Intracellular metabolism of fatty acids regulates insulin secretion (R-HSA-434313)
#196
ukemi
opened
1 year ago
0
Fatty Acids bound to GPR40 (FFAR1) regulate insulin secretion (R-HSA-434316)
#195
ukemi
opened
1 year ago
0
Regulation of insulin secretion (R-HSA-422356)
#194
ukemi
opened
1 year ago
0
Insulin Processing (R-HSA-264876)
#193
ukemi
opened
1 year ago
5
Insulin Receptor Recycling (R-HSA-77387)
#192
ukemi
closed
1 year ago
1
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R) (R-HSA-2404192)
#191
ukemi
closed
1 year ago
1
Fix dup filename for #188
#190
dustine32
closed
1 year ago
1
Define rules for imported model IDs and filenames
#189
dustine32
closed
9 months ago
10
Fix redundant filenaming in YeastPathways models
#188
dustine32
closed
1 year ago
0
Carnitine biosynthesis R-HSA-71262
#187
deustp01
opened
1 year ago
1
Gluconeogenesis (R-HSA-70263)
#186
ukemi
closed
1 year ago
9
Use pathway ID to extract GO BP term
#185
dustine32
closed
1 year ago
1
Check stepDirection for YeastCyc
#184
dustine32
closed
1 year ago
0
Signalling by insulin receptor (R-HSA-74752 )
#183
ukemi
closed
1 year ago
13
Still say 'NO' to drugs
#182
ukemi
closed
1 year ago
22
Lewis blood group biosynthesis (R-HSA-9037629)
#181
ukemi
opened
2 years ago
2
ABO blood group biosynthesis (R-HSA-9033807)
#180
ukemi
closed
2 years ago
3
Use makeIndividual wrapper that adds metadata
#179
dustine32
closed
2 years ago
1
Add 'Guide to Pharmacology' as drug prefix
#178
dustine32
closed
1 year ago
3
Add annotations to all individuals
#177
ukemi
closed
2 years ago
1
Reactome Release 82
#176
ukemi
closed
1 year ago
25
CS/DS degradation (R-HSA-2024101)
#175
ukemi
opened
2 years ago
1
Relationships for transporters/transport; inference of transporters
#174
deustp01
opened
2 years ago
1
Align Reactome annotation of SLC9B2 functions with GO MF terms
#173
deustp01
closed
1 year ago
0
Lysosomal Oligosaccharide catabolism R-HSA-6799545
#172
ukemi
opened
2 years ago
2
Keratan sulfate degradation (R-HSA-2022857)
#171
ukemi
opened
2 years ago
3
Transport and synthesis of PAPS (R-HSA-174362)
#170
ukemi
closed
2 years ago
1
HS-GAG degradation (R-HSA-2024096)
#169
ukemi
opened
2 years ago
0
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