issues
search
genomeannotation
/
transvestigator
Validates transcriptome and prepares it for submission to the NCBI
MIT License
3
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Confirm that use of BLAST's `-max_target_seqs` is intentional
#30
armish
opened
5 years ago
0
write "RSEM transcript ... does not exist" message to log file
#29
bruab
closed
9 years ago
0
write removed.fsa
#28
bruab
opened
9 years ago
0
make less ugly names? or use utility script to fix as needed
#27
smg283
closed
9 years ago
0
no gene name, then give no gene name
#26
smg283
closed
9 years ago
0
Doc RSEM
#25
smg283
opened
9 years ago
0
Make user supplied options
#24
smg283
opened
9 years ago
0
Discard Fasta/GFF
#23
smg283
opened
9 years ago
0
flaggy
#22
smg283
closed
9 years ago
0
add section about stats to docs
#21
bruab
opened
9 years ago
0
utility script to remove transcripts from fasta and tbl file
#20
bruab
closed
9 years ago
0
AttributeError on attempted annotation
#19
bruab
closed
9 years ago
2
MRNA wrapper class
#18
bruab
closed
9 years ago
0
Gene wrapper class
#17
bruab
closed
9 years ago
0
Fix long gene names
#16
bruab
closed
9 years ago
5
Partial CDSs need room to stretch out
#15
bruab
closed
9 years ago
6
write proteins.fasta and cds.fasta
#14
bruab
closed
9 years ago
2
Transcript.make_positive() makes positives positive
#13
bruab
closed
9 years ago
1
Store BLAST hits with Transcript object
#12
bruab
closed
9 years ago
1
Store RSEM information in/with Transcript object
#11
bruab
closed
9 years ago
0
Read HMMER output
#10
bruab
opened
9 years ago
0
Read BLAST table
#9
bruab
closed
9 years ago
0
read config file
#8
bruab
closed
9 years ago
2
Read RSEM information, display in a table
#7
bruab
closed
9 years ago
0
Write new gff file
#6
bruab
closed
10 years ago
0
Attempt to fix phase for partial features starting at base 2 or 3
#5
bruab
closed
10 years ago
0
CDS longer than containing sequence
#4
bruab
closed
10 years ago
1
Handle negative strand appropriately
#3
bruab
closed
10 years ago
1
Correct for internal stops
#2
bruab
closed
10 years ago
2
s/Pfam/PFAM/
#1
bruab
closed
10 years ago
1