issues
search
greenelab
/
mpmp
Multimodal Pan-cancer Mutation Prediction
BSD 3-Clause "New" or "Revised" License
7
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Get final models (coefficients) for all data types
#93
jjc2718
closed
2 years ago
2
Larger figure fonts for publication
#92
jjc2718
closed
2 years ago
1
Small (hopefully last) figure tweaks
#91
jjc2718
closed
2 years ago
1
values deprecated in pandas
#90
jjc2718
opened
2 years ago
0
Save coefficients/hyperparameters for gene expression models
#89
jjc2718
closed
2 years ago
1
Multi-omics neural network models, part 2
#88
jjc2718
closed
2 years ago
1
Paper revision figure tweaks/notebook updates
#87
jjc2718
closed
2 years ago
1
Predictions on samples from normal tissue
#86
jjc2718
closed
2 years ago
1
Gene-level filtering vs. per-cancer type filtering
#85
jjc2718
closed
2 years ago
0
Multi-omics neural network models, part 1
#84
jjc2718
closed
2 years ago
0
Add Bayesian optimization for multi-omics hyperparameter selection
#83
jjc2718
closed
2 years ago
1
GO functional enrichment analysis of cancer gene sets
#82
jjc2718
closed
2 years ago
1
Extend top/random gene sets to match size of merged gene set
#81
jjc2718
closed
2 years ago
0
Run "drop target" experiment for all Vogelstein genes
#80
jjc2718
closed
2 years ago
1
COSMIC CGC gene set analysis, part 2
#79
jjc2718
closed
2 years ago
0
Regenerate/rerun random and top gene sets
#78
jjc2718
closed
2 years ago
0
Outstanding cosmetic issues
#77
jjc2718
closed
2 years ago
0
Add script to count valid samples/cancer types
#76
jjc2718
closed
2 years ago
0
COSMIC CGC gene set analysis, part 1
#75
jjc2718
closed
2 years ago
0
Explore gene dosage effects
#74
jjc2718
closed
2 years ago
1
Feature selection using f-test
#73
jjc2718
closed
2 years ago
2
Batch effect correction "titration" experiments
#72
jjc2718
closed
2 years ago
1
Batch correction experiments
#71
jjc2718
closed
2 years ago
1
Survival prediction using mutation predictions
#70
jjc2718
closed
3 years ago
1
Add mutation data as features/predictors for survival
#69
jjc2718
closed
3 years ago
1
Fix logging file size issue
#68
jjc2718
closed
3 years ago
1
Small tweaks to gene expression figure
#67
jjc2718
closed
3 years ago
2
Survival results update
#66
jjc2718
closed
3 years ago
0
Shuffle labels for baseline in each cancer type independently
#65
jjc2718
closed
3 years ago
1
Paper updates
#64
jjc2718
closed
3 years ago
2
Make heatmap highlights/boxes more distinct
#63
jjc2718
closed
3 years ago
0
Comparing -omics types for survival prediction, part 2
#62
jjc2718
closed
3 years ago
2
Add baseline significance info to volcano plots
#61
jjc2718
closed
3 years ago
1
Microsatellite instability (MSI) prediction
#60
jjc2718
closed
3 years ago
2
Comparing -omics types for survival prediction, part 1
#59
jjc2718
closed
3 years ago
3
Small changes to plots/statistical testing code
#58
jjc2718
closed
3 years ago
0
Run plot scripts with AUROC instead of AUPR
#57
jjc2718
closed
3 years ago
1
Figure edits
#56
jjc2718
closed
3 years ago
1
Put processed data on figshare
#55
jjc2718
closed
3 years ago
0
Update README
#54
jjc2718
closed
3 years ago
0
Update figures with results from extended parameter ranges
#53
jjc2718
closed
3 years ago
1
Plot heatmap to summarize per-gene comparison results
#52
jjc2718
closed
3 years ago
1
Refactor plotting code in notebooks
#51
jjc2718
closed
3 years ago
1
Tweaks to figures
#50
jjc2718
closed
3 years ago
0
Figure generation script + other repo cleanup
#49
jjc2718
closed
3 years ago
1
Fix for "disappearing genes" issue
#48
jjc2718
closed
3 years ago
0
Add microRNA data to all data types experiments
#47
jjc2718
closed
3 years ago
1
Refactor argparse code into shared/not-shared components
#46
jjc2718
opened
3 years ago
0
Disentangled methylation dimension reduction
#45
jjc2718
opened
3 years ago
1
where are the genes going
#44
jjc2718
closed
3 years ago
3
Next