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grimbough
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biomaRt
R package providing query functionality to BioMart instances like Ensembl
https://bioconductor.org/packages/biomaRt/
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`pberghei_eg_gene` geneset have all genes missing as compared to PlasmoDB
#110
Rohit-Satyam
opened
5 days ago
1
`getBM()` error "... more columns than column names"
#109
karlmakepeace
opened
1 week ago
1
`getBM()` attribute header/value mismatch
#108
karlmakepeace
opened
1 week ago
0
ENSEMBLE 88
#107
AR-Shicheng
opened
1 month ago
5
getLDS function query.....
#106
Shikari666
opened
1 month ago
0
Error in req_perform(useast) : Failed to perform HTTP request.
#105
satish1907
closed
2 months ago
4
Query ERROR
#104
Struggle-Lee
opened
3 months ago
7
Chromosome name filter doesn't recognize letters and numbers
#103
rbutleriii
closed
3 months ago
1
SEC_E_CERT_EXPIRED
#102
WhalleyT
opened
4 months ago
0
getBM(attributes="minor_allele") returns results "NA"s
#101
Nerissa-258
opened
5 months ago
0
Error getLDS()
#100
Kan-E
opened
5 months ago
2
Error choosing mirror
#99
Merguerrero
opened
5 months ago
0
Error accessing biomart
#98
SamTah
opened
5 months ago
0
More robustness against ensemble errors
#97
Mitmischer
opened
5 months ago
0
Wrong results returned for queries of multiple genes
#96
Mitmischer
opened
5 months ago
0
Unable to download non-reference genome.
#95
raymondconor21
opened
5 months ago
0
Unable to use biomaRt
#94
NTherrien93
opened
6 months ago
1
Feature request: Add 'host' argument to useEnsemblGenomes()
#93
hpages
closed
6 months ago
1
ensembl_peptide_id_version in zebrafish?
#92
marwa38
opened
8 months ago
0
Expired Certificate - useEnsembl
#91
hb-cy
closed
9 months ago
0
dump error
#90
abrionne
opened
9 months ago
2
biomaRt::select throws Error in `collect()`: ! Failed to collect lazy table
#89
ChangqingW
closed
9 months ago
7
Bacterial genomes mart
#88
phisanti
opened
11 months ago
0
Possible SSL connectivity problems detected: How can I possibly fix this?
#87
Shrishtee-kandoi
opened
11 months ago
1
how to convert cpg id's to genes using biomart in R
#86
reem0331
opened
12 months ago
0
Error: biomaRt has encountered an unknown server error. HTTP error code: 502(404)
#85
AndoYutaro
opened
1 year ago
1
Error in curl::curl_fetch_memory(url, handle = handle)
#84
powerhorse1986
opened
1 year ago
0
Non protein_coding biotypes
#83
AHinsu
opened
1 year ago
0
Error: biomaRt has encountered an unknown server error. HTTP error code: 404
#82
hyjforesight
opened
1 year ago
1
Possible SSL connectivity problems detected.
#81
rubie7109
closed
11 months ago
2
"Possible SSL connectivity problems detected:
#80
Charl-Hutchings
closed
11 months ago
1
unused argument (feature_symbol = "external_gene_name")
#79
ryf0810
closed
1 year ago
1
"Possible SSL connectivity problems detected."
#78
dvg-p4
closed
11 months ago
1
GEDI package
#77
Maryan12m
opened
1 year ago
2
WISH: Handle cache race conditions (e.g. "Multiple cache results found.")
#76
HenrikBengtsson
closed
1 year ago
4
DESCRIPTION: URL and BugReports
#75
HenrikBengtsson
closed
1 year ago
1
Multiple `ensembl-marts-109` entries in biomaRt's cache break biomaRt:::.listEnsembl()
#74
hpages
closed
1 year ago
4
How to obtain actual position of all CpG sites in GRCm38 mouse genome?
#73
kaanokay
opened
1 year ago
0
Argument "host" is missing, with no default using `useEnsembl`
#72
ferygood
opened
1 year ago
0
Updated needed to posted XML?
#71
grimbough
closed
1 year ago
1
Ensembl site unresponsive, trying useast mirror
#70
Shicheng-Guo
opened
1 year ago
1
Error with getBM with certain attributes ("go_id")
#69
licmn
opened
1 year ago
1
Support for SurePrint G3 Human Gene Expression v3 8x60K Microarray Kit
#68
SamThilmany
opened
2 years ago
0
Error in curl
#67
Rom1M
closed
2 years ago
1
Error getLDS() - Error in attributes(.Data)
#66
saphir746
opened
2 years ago
5
fix partial argument matching and bfcremove error
#65
LiNk-NY
closed
2 years ago
1
`.listMarts` not working when host argument changes
#64
LiNk-NY
closed
2 years ago
3
getLDS Error
#63
ESUIT-SU
closed
2 years ago
1
Missing link of numbers of Orthologs between mouse and human
#62
tt342400
closed
2 years ago
1
biomaRt error in converting mouse to hg gene orthologs
#61
pallavisurana1
opened
2 years ago
15
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