guanchangge mosaik-aligner issues

guanchangge / mosaik-aligner

Automatically exported from code.google.com/p/mosaik-aligner

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potential issue with ASCII offset and FASTQ files?

#87 GoogleCodeExporter opened 8 years ago
2
Mosaikbuild fails to process PE SOLiD reads.

#86 GoogleCodeExporter opened 8 years ago
1
JumpHash: Error writing output

#85 GoogleCodeExporter opened 8 years ago
12
MosaikAligner has segmentation fault for solid pair-end reads

#84 GoogleCodeExporter opened 8 years ago
1
SNP and indels from SAM

#83 GoogleCodeExporter opened 8 years ago
3
Integer owerflow

#82 GoogleCodeExporter opened 8 years ago
2
MosaikBuild: fail to build dat file from Homo_sapiens.GRCh37.60.dna.toplevel.fa.gz

#81 GoogleCodeExporter opened 8 years ago
1
MosaikDupSnoop is very slow with network storage

#80 GoogleCodeExporter opened 8 years ago
0
base quality score limitation in MosaikText

#79 GoogleCodeExporter opened 8 years ago
8
MosaikSort: restitch serialized alignments:Segmentation fault

#78 GoogleCodeExporter opened 8 years ago
2
MosaikBuild deletes 20% of reads randomly

#77 GoogleCodeExporter closed 8 years ago
12
colorspace conversion with mosaikbuild fails

#76 GoogleCodeExporter closed 8 years ago
5
Asymmetric result for split read alignments

#75 GoogleCodeExporter opened 8 years ago
9
MosaikText does not generate MD tag in SAM output

#74 GoogleCodeExporter closed 8 years ago
7
MosaikTools compilation error

#73 GoogleCodeExporter closed 8 years ago
2
MosaikBuild ERROR with SOLiD data, The lengths of bases(49) and qualities(50) of Read didn't match.

#72 GoogleCodeExporter closed 8 years ago
1
MosaikBuild

#71 GoogleCodeExporter opened 8 years ago
1
MosaikText conversion to .bed file is 1-based and should be 0-based

#70 GoogleCodeExporter closed 8 years ago
1
BAM/SAM output clipping is not identified in Cigar string

#69 GoogleCodeExporter opened 8 years ago
3
SNPs coordination in *.gff file

#68 GoogleCodeExporter closed 8 years ago
3
Problem aligning 454 reads to short (~8kb or less) assembly

#67 GoogleCodeExporter closed 8 years ago
2
MosaikSort hangs.

#66 GoogleCodeExporter opened 8 years ago
2
MosaikBuild ERROR: The mate1 read name did not match the mate2 read name. Resynchronization support needs to be implemented.

#65 GoogleCodeExporter closed 8 years ago
5
is there any way to analyze .bam alignment file using gigaBayes?

#64 GoogleCodeExporter closed 8 years ago
1
question about MosaikSort

#63 GoogleCodeExporter opened 8 years ago
0
A position was specified that is larger than the jump positions database

#62 GoogleCodeExporter opened 8 years ago
0
MosaikAligner creates alignments that are incompatible with MosaikText

#61 GoogleCodeExporter opened 8 years ago
0
Error with MosaikBuild reading FASTQ files with an empty line at the end of the file

#60 GoogleCodeExporter opened 8 years ago
2
MosaikAlign: ERROR: Found a gap in both the reference sequence and query sequence.

#59 GoogleCodeExporter opened 8 years ago
0
MosaikSort never terminates

#58 GoogleCodeExporter opened 8 years ago
2
Bug(?) in AlignmentRead.cpp

#57 GoogleCodeExporter opened 8 years ago
0
-rur option corrupts the quality line

#56 GoogleCodeExporter opened 8 years ago
1
-rur option corrupts the quality line

#55 GoogleCodeExporter closed 8 years ago
1
Error when merging base space alignment with colour space alignment

#54 GoogleCodeExporter opened 8 years ago
0
MosaikAligner

#53 GoogleCodeExporter opened 8 years ago
0
ERROR: Unable to initialize the uncompressed FastLZ buffer (Read).

#52 GoogleCodeExporter opened 8 years ago
1
MosaikAssembler, writing assembly header ERROR

#51 GoogleCodeExporter opened 8 years ago
1
MosaikSort cannot run!!!

#50 GoogleCodeExporter opened 8 years ago
2
MosaikAligner error with memory?

#49 GoogleCodeExporter opened 8 years ago
0
MosaikText fails to compile with intel 11.1

#48 GoogleCodeExporter opened 8 years ago
4
MosaikBuild: The procedure entry point ?_Xmem@tr1@@YAXXZ could not be located in the dynamic link library MSVCP90.dII

#47 GoogleCodeExporter opened 8 years ago
1
MosaikCoverage: ERROR: Tried to write past the end of the coverage array

#46 GoogleCodeExporter opened 8 years ago
0
MosaikSort looses all non-unique reads during sorting when using -a all|multi|single in MosaikAligner

#45 GoogleCodeExporter opened 8 years ago
1
Error while starting MosaikBuild in Windows

#44 GoogleCodeExporter opened 8 years ago
0
Unclear Gigabayes 0utput

#43 GoogleCodeExporter closed 8 years ago
1
"Write Statistics to Parsable File or Stddout w/ Status in stderr"

#42 GoogleCodeExporter opened 8 years ago
2
unaligned reads

#41 GoogleCodeExporter opened 8 years ago
3
MosaikMerge Segmentation Fault

#40 GoogleCodeExporter opened 8 years ago
1
Weird alignments

#39 GoogleCodeExporter opened 8 years ago
0
error during Mosaik Aligner execution

#38 GoogleCodeExporter opened 8 years ago
0

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