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ancient-structure
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Re-do analysis with fewer missingness
#27
halasadi
opened
8 years ago
2
Prepare report for 11/22 Meeting
#26
halasadi
closed
8 years ago
0
Include Indo-Europeans individuals in the analysis
#25
halasadi
closed
8 years ago
1
Read Engelhardt-Blei, Falush Admixture LD and Chromopainter paper
#24
kkdey
closed
8 years ago
0
Check if more structure to moderns after ancient clusters are adjusted
#23
kkdey
closed
8 years ago
1
Check eigenvalues of the PCA plot for modern+ancient pooled data
#22
kkdey
closed
8 years ago
1
Check if Loschbour is source
#21
kkdey
closed
8 years ago
1
Progress Report
#20
halasadi
closed
8 years ago
0
Use PCA and admixture on modern population groups instead of individual modern samples
#19
kkdey
closed
8 years ago
1
Apply model 3 to Haak Fig 3 LD pruned data and write report
#18
kkdey
closed
8 years ago
0
Write down model 3 using Matthew's suggestions
#17
kkdey
closed
8 years ago
0
Chromosome map of the heterozygosity of the SNPs
#16
kkdey
closed
8 years ago
1
Fix cluster membership of source populations
#15
halasadi
closed
8 years ago
1
Check the data quality Haak et al 2015
#14
halasadi
closed
8 years ago
1
Meeting Summary
#13
halasadi
closed
9 years ago
0
Prepare report for meeting
#12
halasadi
closed
9 years ago
1
Implement low coverage correction of Skottee et al 2013
#11
halasadi
closed
8 years ago
0
Incorporate sample size error
#10
halasadi
closed
9 years ago
1
Why Iceman does not cluster with Sardinians in Admixture
#9
kkdey
closed
8 years ago
1
Plot admixture proportions on world map
#8
halasadi
closed
8 years ago
0
Refactoring the code
#7
kkdey
closed
9 years ago
0
Investigate the affect of drift on the model
#6
halasadi
closed
9 years ago
1
Exploratory data analysis
#5
halasadi
closed
9 years ago
1
Reproduce Haak et al figure 3 with model from issue 3
#4
halasadi
closed
9 years ago
1
Extension of Model in Issue 1 to unknown ancestors
#3
kkdey
closed
9 years ago
2
Reproduce Fig 3 from Haak 2015 using model in Issue 1
#2
kkdey
closed
9 years ago
1
Binomial model of admixture with known ancestors
#1
halasadi
closed
9 years ago
4