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hiclib
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pastis
Poisson-based algorithm for stable inference of DNA Structure
http://hiclib.github.io/pastis/
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I use the mds model. The error message is as follows
#108
lanyunxin
opened
8 months ago
1
How to convert .hic or cool format to .npy file?
#107
hanshanmengqi
opened
10 months ago
2
Diploid genome structure
#106
jinlizhang200706
opened
11 months ago
2
New pip package?
#105
pierrepo
opened
1 year ago
4
is this tool still available?
#104
PengfeiInTuebingen
opened
1 year ago
2
How to choose one chromosome for construction ?
#103
liufuyan2016
opened
1 year ago
2
I don't know how to use the "Pastis-NB" model
#102
shenlinyong
opened
1 year ago
0
Resume inference
#101
mozesjacobs
opened
2 years ago
0
Add bias
#100
mozesjacobs
opened
2 years ago
0
Clean up code in class PM2
#99
NelleV
opened
2 years ago
0
It seems that an error exists in the code
#98
fangzhen-li
opened
2 years ago
0
Is this still available?
#97
biofcallejas
opened
2 years ago
1
Juicer gallery example
#96
mozesjacobs
opened
2 years ago
0
MAINT adding several python versions to test
#95
NelleV
opened
2 years ago
0
Testing github actions
#94
NelleV
closed
2 years ago
0
Juicer gallery example
#93
mozesjacobs
closed
2 years ago
2
Can pastis reconstruct 3D model for the whole genome?
#92
hzjsxu
opened
3 years ago
0
some problems pastis-pm2
#91
jmdeer
closed
3 years ago
0
main yml for github actions
#90
mozesjacobs
closed
2 years ago
5
test simple github actions
#89
mozesjacobs
closed
3 years ago
1
pastis to pdb script w/ test cases
#88
mozesjacobs
opened
3 years ago
2
MAINT run some tests on github-actions
#87
NelleV
closed
3 years ago
1
FIX branch name in github actions
#86
NelleV
closed
3 years ago
0
MAINT/DOC creating quick github action to deploy website automatically
#85
NelleV
closed
3 years ago
1
ENH adding validation module
#84
NelleV
closed
3 years ago
1
MAINT/DOC on dispersion estimation
#83
NelleV
closed
3 years ago
1
Filtering Gallery Example - Try 2
#82
mozesjacobs
closed
3 years ago
1
MAINT updates and clean ups on the NB model
#81
NelleV
closed
3 years ago
1
Adding estimation of the dispersion
#80
NelleV
closed
3 years ago
1
Filtering Gallery Example
#79
mozesjacobs
closed
3 years ago
1
[DOC] Added toy example to visualize 3D structure
#78
NelleV
closed
3 years ago
1
Toy Example
#77
mozesjacobs
closed
3 years ago
6
mapping between the HiC contact map and the 3D model
#76
jazberna1
opened
3 years ago
0
DOC adding cross link between gallery and API
#75
NelleV
closed
3 years ago
1
Cooler functionality
#74
mozesjacobs
closed
3 years ago
8
MAINT version 0.4 has been released
#73
NelleV
closed
3 years ago
1
FIX travis?
#72
NelleV
closed
4 years ago
1
Error using: pip3.7 install pastis
#71
yliueagle
opened
4 years ago
1
NA value from the output structure
#70
chenggonghan
closed
4 years ago
2
Additional diploid unit tests
#69
gesinecauer
closed
4 years ago
7
Errored out with exit
#68
b2jia
opened
4 years ago
2
MAINT deprecated fastio
#67
NelleV
closed
4 years ago
1
Adding unit tests for diploid
#66
gesinecauer
closed
4 years ago
1
Modifying pastis poisson
#65
gesinecauer
closed
4 years ago
1
Generate data can now return intensity process
#64
NelleV
closed
4 years ago
0
MAINT+DOC building documentation as part of the tests
#63
NelleV
closed
4 years ago
0
MAINT activating python 3.7 on travis
#62
NelleV
closed
4 years ago
0
ENH activating unit test coverage
#61
NelleV
closed
4 years ago
0
MAINT iced is now a dependency
#60
NelleV
closed
4 years ago
0
Adding helper function to generate datasets.
#59
NelleV
closed
4 years ago
0
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