imgag ngs-bits issues - Githubissues

imgag / ngs-bits

Short-read sequencing tools

MIT License

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issues

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Added an option to set separate proxy settings for connecting to external GSvar servers

#561 ubuntolog closed 1 day ago
0
BedLowCoverage/BedHighCoverage: now using sweep algorithm as default

#560 marc-sturm closed 2 days ago
0
ClinVar API update

#559 leonschuetz closed 2 days ago
0
ExtractMethylationData

#558 leonschuetz closed 2 days ago
0
Create a code to run a maintenance process on timer every minute

#557 ubuntolog closed 3 days ago
0
GSvarServer: update SGE status

#556 marc-sturm opened 3 days ago
0
Add a flag "use_proxy_for_gsvar_server" that will force the use of proxy from the settings

#555 ubuntolog closed 1 day ago
0
Endpoint for getting processed sample hash from the server

#554 ubuntolog opened 4 days ago
1
Somatic sv config

#553 Ott-Alexander closed 1 week ago
0
PRS

#552 leonschuetz closed 2 weeks ago
0
Process correctly all PathTypes on the server

#551 ubuntolog closed 2 weeks ago
0
Updated import of REs into NGSD

#550 marc-sturm closed 3 weeks ago
0
REs can now be part of the germline report

#549 marc-sturm closed 3 weeks ago
0
src/GSvar/RepeatExpansionWidget.*: added support for Straglr

#548 leonschuetz closed 1 month ago
0
Fix contamination detection in MappingQC

#547 leonschuetz closed 2 weeks ago
0
NovaSeqX: Add flag for processed samples which will be re-sequenced

#546 leonschuetz closed 3 days ago
0
Confirm that the instructions for building ngs-bits from sources (Linux/MacOS) still works

#545 luskx016 closed 1 month ago
2
Switching from text files to Sqlite database for storing session information

#544 ubuntolog closed 1 month ago
0
Transition to Sqlite for storing session information

#543 ubuntolog closed 1 month ago
0
REPEAT_EXPANSIONS is missing from PathTypes in NGSD

#542 ubuntolog closed 1 month ago
1
lrGS extension

#541 leonschuetz closed 1 month ago
0
GSvar: speed-up edit widget of processed sample

#540 marc-sturm closed 1 day ago
0
Server log rotation does not work in production

#539 ubuntolog closed 3 weeks ago
0
EC2 instance console output monitoring

#538 ubuntolog opened 2 months ago
0
Error handling for Celery task chains

#537 ubuntolog opened 2 months ago
0
get sample sender from GenLab

#536 marc-sturm opened 2 months ago
0
GSvar: create filter set for CNVs in LR samples

#535 leonschuetz closed 1 month ago
0
GSvar: load default filter based on processing system

#534 leonschuetz opened 2 months ago
0
GSvar - PS tab: add samples with same patient ID to related samples table + add context menu entry to calcualte sample similarity

#533 marc-sturm opened 2 months ago
0
KASP: add last update date and user

#532 marc-sturm opened 2 months ago
0
GSvar: added sequencing platform and read length to technical report

#531 marc-sturm closed 2 months ago
1
sample search: add samples with variants only

#530 marc-sturm closed 2 months ago
1
GSVar: Make `KeepFastq` of NovaSeqX SampleSheet export configurable in settings

#529 BeneKenobi closed 1 month ago
2
update ClinVar API

#528 marc-sturm opened 3 months ago
1
MappingQC error related to FASTA index

#527 sjaenick closed 3 months ago
1
Make use of AWS Route53 API to create subdomains for new customers

#526 ubuntolog closed 2 months ago
0
Mac OS github build fails due to the Python update

#525 ubuntolog opened 3 months ago
0
Compile Error - undefined reference to `curl_easy_getinfo@CURL_OPENSSL_4’

#524 HandsYe closed 3 months ago
3
longread trio/multi

#523 leonschuetz closed 3 months ago
0
GSvar: multi-sample report

#522 marc-sturm opened 4 months ago
0
LongReads: add long-read support for SampleGender and GSvar

#521 leonschuetz closed 4 months ago
1
Upload API for read data

#520 ubuntolog opened 4 months ago
0
Working demo of megSAP on AWS

#519 ubuntolog opened 4 months ago
0
Make a decision on subdomains for individual instances of GSvarServer for organizations

#518 ubuntolog closed 3 months ago
0
Add dialog showing interpretability of target region

#517 marc-sturm opened 4 months ago
0
Improves backup file handling for URLs and sessions

#516 ubuntolog closed 4 months ago
0
LongReads: Add long-read support for SampleSimilarity

#515 leonschuetz closed 4 months ago
2
Send a link to the demo instance to all

#514 ubuntolog opened 5 months ago
0
Impressum page

#513 ubuntolog closed 3 months ago
1
Download page of GSvar client on gscloud.imgag.de

#512 ubuntolog closed 4 months ago
0