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iqbal-lab
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Mykrobe-predictor
Antibiotic resistance predictions in minutes on a laptop
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import Android support
#54
Phelimb
closed
9 years ago
1
Suggested changed to UI README.
#53
Phelimb
closed
9 years ago
1
Windows build
#52
Phelimb
closed
9 years ago
10
Set up Windows build infrastructure
#51
Phelimb
closed
9 years ago
0
Add libs to git?
#50
Phelimb
closed
9 years ago
2
del
#49
iqbal-lab
closed
9 years ago
1
Remove GPL references
#48
iqbal-lab
closed
9 years ago
2
I've broken the ONT branch
#47
iqbal-lab
closed
9 years ago
8
Seq Fault if best hit doesn't return a valid enum
#46
Phelimb
closed
9 years ago
3
(Trivial) Memory leaks in new species code
#45
Phelimb
closed
8 years ago
5
Use PHE dataset to build exemplar panels for virulence genes
#44
iqbal-lab
closed
9 years ago
1
Add saprophyticus back to our panel
#43
iqbal-lab
closed
9 years ago
1
With Michel's panel what drugs meet FDA requirements?
#42
iqbal-lab
closed
9 years ago
2
Add mecA vs epi figure to supp
#41
Phelimb
closed
9 years ago
1
Could we fix the spelling of catalase in the code?
#40
iqbal-lab
closed
9 years ago
0
Harmonise species text strings
#39
iqbal-lab
closed
9 years ago
2
Add --clonal option
#38
Phelimb
closed
9 years ago
0
Harmonise JSON output between Staph and TB
#37
iqbal-lab
closed
9 years ago
25
Provide a measure of heterozygosity
#36
iqbal-lab
closed
9 years ago
1
If we do a better job of incorporating genes from the training set
#35
iqbal-lab
closed
9 years ago
1
del
#34
iqbal-lab
closed
9 years ago
1
Improve species id
#33
iqbal-lab
closed
5 years ago
1
Add Oryx Africanum A and B to panel
#32
Phelimb
closed
5 years ago
3
Possibly missing good minor calls in Iso
#31
Phelimb
closed
9 years ago
6
Consider adding epistatic TB info
#30
iqbal-lab
closed
9 years ago
0
FP ERY on C00012757, don't think we should be calling this.
#29
Phelimb
closed
9 years ago
5
Bad call on C00001215
#28
Phelimb
closed
9 years ago
7
Update staph panel using Michel's info
#27
iqbal-lab
closed
9 years ago
6
Automated means of extending gene panel with a training set
#26
iqbal-lab
closed
9 years ago
1
del
#25
iqbal-lab
closed
9 years ago
0
Make susceptibility calls based on median coverage in mixed.
#24
Phelimb
closed
9 years ago
3
Mykrobe hangs forever on BAM of 80k
#23
Phelimb
closed
9 years ago
10
Order TB drugs the way Tim wants them in JSON (will feed to UI)
#22
iqbal-lab
closed
9 years ago
1
Weird call in 6639-04
#21
Phelimb
closed
9 years ago
4
TB progress output mixed with JSON
#20
iqbal-lab
closed
9 years ago
5
Staph generated JSON is missing a comma after called_variants;
#19
iqbal-lab
closed
9 years ago
3
Make capitalisation and spacing consistent for species
#18
iqbal-lab
closed
9 years ago
1
Record all variants found, rather than the first in the for loop.
#17
Phelimb
closed
9 years ago
2
No evidence given for inducible Clindamycin resistance
#16
iqbal-lab
closed
8 years ago
3
Add cmd_line option to output start and end times in JSON
#15
Phelimb
closed
8 years ago
0
Build phylogeny of Staphylococci and choose phylo-informative SNPs
#14
iqbal-lab
closed
9 years ago
2
Add induced_resistance to JSON called_genes and called variants output.
#13
Phelimb
closed
9 years ago
3
Add in the JSON the expected depth of covg?
#12
Phelimb
closed
9 years ago
0
Different results on same sample using --file or --list
#11
Phelimb
closed
9 years ago
2
JSON output can be invalid JSON
#10
Phelimb
closed
9 years ago
0
Remove version and cmdline output from JSON
#9
Phelimb
closed
9 years ago
1
Suspicious read counts
#8
iqbal-lab
closed
9 years ago
10
SegFault in TB species enum goes out of defined values
#7
Phelimb
closed
9 years ago
2
JSON output for TB always prints R when stdout prints r
#6
Phelimb
closed
9 years ago
0
2. For genes, print %recovered, median_on_recovered
#5
Phelimb
closed
9 years ago
0
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