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jasonkyuyim
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se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation
https://arxiv.org/abs/2302.02277
MIT License
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J.1. Training details
#43
LivC93
closed
6 days ago
5
Reproduce final results
#42
ZichongWang
opened
3 weeks ago
1
Some questions about dataprocessing code for multimer
#41
sirius777coder
closed
2 weeks ago
2
Question on RMSD Calculation
#40
Immortals-33
opened
1 month ago
4
A question on SO(3) equivariance
#39
wzm2256
opened
5 months ago
0
trans_x0_threshold=1.0 ？
#38
jiaweiguan
opened
7 months ago
13
math in SE(3) diffusion model
#37
knightzzz9w
opened
8 months ago
1
One Question about Validation (Intermittent evaluation)
#36
cnexah
closed
8 months ago
2
Evaluating diversity of structures
#35
Guo-Stone
closed
8 months ago
2
Small issue about warm start in training code
#34
Immortals-33
closed
1 year ago
1
A theoretical problem about protein structure DDPM and SE(3) invariant model
#33
Guo-Stone
closed
7 months ago
4
Question about Table 1 FrameDiff sample metrics
#32
RinGhalSun
closed
1 year ago
5
issue about amp and rigid transform
#31
WeianMao
closed
8 months ago
1
Issue with FileNotFoundError for sample_1.fa during inference
#30
RinGhalSun
closed
1 year ago
2
about sample in training dataset
#29
WeianMao
closed
8 months ago
1
How to generate dynamic images in the demo?
#28
wewewexiao2008
closed
1 year ago
4
self condition question
#27
Wangchentong
closed
7 months ago
3
Fix __len__() of the `TrainSampler` class
#26
amorehead
closed
1 year ago
0
Does `DistributedTrainSampler` also need to be updated for `cluster` support?
#25
amorehead
closed
1 year ago
2
Superposing generated structures
#24
amorehead
closed
7 months ago
4
Unexpected NaN Error Encountered When Training with NVIDIA GeForce RTX 4090 GPU
#23
Z-MU-Z
closed
7 months ago
6
Reproduction SE3 Diffusion on CATH40
#22
pengzhangzhi
closed
7 months ago
7
Clarification on auxiliary loss weight
#21
amorehead
closed
1 year ago
1
guidance function fails
#20
pengzhangzhi
closed
1 year ago
3
Setting baynex
#19
PerfectMartini
closed
1 year ago
1
About rotation loss dynamics
#18
amorehead
closed
1 year ago
10
add DDP support,main change:1.add get_ddp_info() in Experiment class.…
#17
Wangchentong
closed
1 year ago
2
question about dataset filtering
#16
Wangchentong
closed
1 year ago
6
PDB Data Preprocess scripts
#15
pengzhangzhi
closed
1 year ago
2
Unused PyTorch modules
#14
amorehead
closed
1 year ago
1
Small runtime improvement
#13
amorehead
closed
1 year ago
1
Question regarding `pad_rigid`
#12
amorehead
closed
1 year ago
1
Small question about padding function
#11
amorehead
closed
1 year ago
1
Small question about chain index shuffling
#10
amorehead
closed
1 year ago
1
Some questions about IGSO3 and score function.
#9
longlongman
closed
1 year ago
10
About time embedding algorithm algorithm
#8
sirius777coder
closed
1 year ago
4
some queries about the SO3_diffusion_example.ipynb notebook
#7
sirius777coder
closed
1 year ago
2
License
#6
ShintaroMinami
closed
1 year ago
1
About algorithm 2 TimestepBatch
#5
jiaweiguan
closed
1 year ago
9
errors in processing mmcif file
#4
pengzhangzhi
closed
1 year ago
8
what tool you use to visualize the diffusion process?
#3
pengzhangzhi
closed
1 year ago
1
is it possible to provide an example for inpainting?
#2
bzhousd
closed
1 year ago
6
updated all code to use rotation matrices not vectors
#1
blt2114
closed
1 year ago
0