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jonescompneurolab
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hnn-core
Simulation and optimization of neural circuits for MEG/EEG source estimates
https://jonescompneurolab.github.io/hnn-core/
BSD 3-Clause "New" or "Revised" License
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BUG: MPI simulations break for `dt` of certain size
#663
ntolley
opened
1 year ago
1
BUG: `net.add_poisson_drive()` throws error depending on `rate_constant` type
#662
ntolley
closed
3 months ago
4
[MRG] Find end pts of section and a numpy version of h.distance()
#661
raj1701
closed
1 year ago
15
optimization with specific within-drive params fixed
#660
darcywaller
closed
3 months ago
4
simplify cell morphology with updated segment coordinates
#659
rythorpe
closed
3 months ago
3
cell response raster plots should show all neurons in the network model
#658
jasmainak
closed
3 months ago
3
Make typing of `src_gids` and `target_gids` consistent
#655
ntolley
opened
1 year ago
0
[MRG] Reverted hdf5 functions and added to_dict method
#654
raj1701
closed
1 year ago
7
[MRG] JOSS Paper
#653
ntolley
closed
1 year ago
5
generalized_opt_routine
#652
carolinafernandezp
closed
1 year ago
44
[ENH] Added read/write method for network object
#651
raj1701
closed
9 months ago
14
Network rw test1
#650
raj1701
closed
1 year ago
0
[MRG] NetworkPlot class to enable interactive visualizations and animations
#649
ntolley
closed
5 months ago
20
[MRG] Added read/write methods and tests for dipole
#648
raj1701
closed
1 year ago
9
[MRG] Clean up net.cell_response
#647
ntolley
closed
3 months ago
5
[MRG] ENH: Custom section colors in Cell.plot_morphology
#646
ntolley
closed
1 year ago
5
expand CellResponse.mean_rates() to calculate binned spikes rates over time for plot_spikes_hist()
#645
rythorpe
opened
1 year ago
2
[MRG] Added read/write methods and tests for cell response
#644
raj1701
closed
1 year ago
9
Cleaning up simulation comparison
#643
chenghuzi
closed
3 months ago
0
[MRG] BUG: fix inconsistency in seeded simulation output
#642
rythorpe
closed
1 year ago
11
setting event_seed for poisson drive doesn't produce consistent spiking between simulations
#641
rythorpe
closed
1 year ago
16
[MRG] ENH: Add option to customize spike histogram colors
#640
ntolley
closed
1 year ago
16
[MRG] Add layered histogram
#639
chenghuzi
closed
2 weeks ago
8
Combining alpha/beta with an ERP
#637
tbardouille
closed
1 year ago
6
[MRG] Add RMSE
#636
chenghuzi
closed
1 year ago
11
[MRG] Add tonic inputs
#635
chenghuzi
closed
2 weeks ago
5
test_mpi_failure periodically fails on CI servers
#634
rythorpe
closed
3 months ago
1
Incorrect plot drawn in plot_simulate_alpha.py example workflow
#633
dylansdaniels
closed
1 year ago
2
Variation in firing of L2/3 Pyramidal cells between trials
#631
mkhalil8
closed
1 year ago
2
[MRG] DOC: add template for reporting installation issues
#630
jasmainak
closed
1 year ago
8
Installation in windows for dummies
#627
srcfernandes
closed
1 year ago
16
setup development branch on master
#624
rythorpe
closed
1 year ago
1
DOC: update navigation bar with 0.3 release
#623
rythorpe
closed
1 year ago
1
MAINT: 0.3 release
#622
rythorpe
closed
1 year ago
2
[MRG] DOC: document retrieve params after optimization
#621
carolinafernandezp
closed
1 year ago
14
DOC: document retrieve params after optimization
#620
carolinafernandezp
closed
1 year ago
1
[MRG] Set legacy mode to false by default
#619
ntolley
closed
1 year ago
14
Clear all simulations and loaded data
#618
chenghuzi
opened
1 year ago
5
Potential read_dipole API compatibility issue
#617
chenghuzi
opened
1 year ago
12
[MRG] Add loading data button
#616
chenghuzi
closed
1 year ago
3
GABAb tau doesn't update after changing values
#615
wagdy88
closed
1 year ago
1
[MRG] Fix legacy param reading for legacy_mode=False
#614
ntolley
closed
1 year ago
2
[ENH] Fixed bug in clear_connectivity and improved tests for deleting drives
#613
raj1701
opened
1 year ago
13
[ENH] Updated clear_drives function and added tests
#612
raj1701
closed
1 year ago
8
[MRG] BUG: Allow adding drives with just NMDA weights
#611
ntolley
closed
1 year ago
4
[MRG] Added return rmse to optimize_evoked
#610
klankinen
closed
1 year ago
8
WIP: Add somatostatin cell type
#609
wagdy88
opened
1 year ago
1
[MRG] Add references to network model documentation
#608
ntolley
closed
1 year ago
2
Loading data in the new GUI
#607
chenghuzi
closed
1 year ago
4
[MRG] ENH: Added instance type check for plot_dipole function and also a test for it
#606
raj1701
closed
1 year ago
16
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