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jsh58
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Genrich
Detecting sites of genomic enrichment
MIT License
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citation for genrich
#113
LinearParadox
opened
6 days ago
0
Specifying Custom hg19 Genome
#112
phoebe460
opened
5 months ago
2
interpretation of q value
#111
pengxin2019
opened
7 months ago
4
All qvalue are -1 in narrowPeak
#110
pengxin2019
closed
7 months ago
7
meanlog and sdlog formulas explanation
#109
BHB26
closed
8 months ago
1
Poorly formatted SAM record error
#108
rotoke
opened
10 months ago
2
CUT&TAG with Genrich
#107
sunta3iouxos
opened
11 months ago
2
IGV and Genrich issues
#106
ChakrabortyJC
closed
7 months ago
1
[Question]: Genrich ATAC-seq read-shifting peak calling
#105
tamuanand
closed
7 months ago
1
Genrich output a broad peak file.
#104
justadustbuster
closed
1 year ago
0
HowTo call peaks from bigwig files?
#103
malcook
closed
7 months ago
2
question: updating Genrich on bioconda - recent Genrich update (debug error SAM w/o sort-order)
#102
tamuanand
opened
1 year ago
0
Removing PCR duplications gets more peaks ?
#101
akhst7
closed
1 year ago
2
link for awk command does not work
#100
ntsopoul
closed
1 year ago
1
Can I use Genrich to call peaks from m6A (MeRIP)-seq data?
#99
zhiyi1988
closed
7 months ago
2
program failed
#98
lmanchon
closed
1 year ago
1
Error! 635104 Cannot Convert to int
#97
tzvi909
closed
1 year ago
2
Description of the -v option
#96
Le1223
closed
1 year ago
1
Consider fragments file as input.
#95
maxim-h
closed
1 year ago
2
Number of peaks fall after including input DNA control
#94
keenhl
closed
1 year ago
1
Request optional fragment length filter
#93
jmw86069
closed
7 months ago
2
Genrich with Cut & Tag samples?
#92
r-mashoodh
closed
1 year ago
4
Genrich with large number of samples
#91
bwenz91
closed
7 months ago
4
Handle a subset of the reference genome during peak calling
#90
Simso86
closed
1 year ago
1
BedGraph-ish with replicates to BigWig
#89
Simso86
closed
2 years ago
2
on determining σ for p-value calculation
#88
malcook
closed
2 years ago
4
Peak summit
#87
wangxiangxiu
closed
1 year ago
1
Error! Cannot parse BAM file
#86
birkiy
closed
2 years ago
1
Genrich on bed derived bam file
#85
emoiso
closed
7 months ago
3
About ATAC-seq peakcalling
#84
ChunjieJiang
closed
2 years ago
2
Background pileup value and AUC cutoff
#83
TeiturAK
closed
2 years ago
1
ATAC-seq pipeline
#82
LunaPatton
closed
2 years ago
2
"poorly formatted BED record" error on bed6 format
#81
lengie
closed
3 years ago
2
Peak calling missing closely located peaks?
#80
Simso86
closed
7 months ago
4
understanding origin of extremely broad peaks
#79
malcook
closed
3 years ago
9
peak calling with repeats
#78
809825706
closed
3 years ago
3
Discordant alignments and -y option in PE ATAC-Seq experiment
#77
uli-arb
closed
3 years ago
1
Error! Failure in ungetc() call
#76
shengxin321
closed
3 years ago
2
Calculation of the p-value for a comprehensive calibration of minimum AUC
#75
lilian18100
closed
1 year ago
1
Peak Calling with a Control or without
#74
lilian18100
closed
1 year ago
1
Calibration of the 'Minimum AUC for a peak' for Atac-seq
#73
lilian18100
closed
3 years ago
4
genrich fails with floating point error (136) on too much input
#72
malcook
closed
3 years ago
7
bedgraphs normalization
#71
sunta3iouxos
closed
3 years ago
4
Can not make
#70
GildasLepennetier
closed
3 years ago
2
bwa multimap reads
#69
sunta3iouxos
closed
3 years ago
1
Error code: "SAM/BAM file not sorted by queryname (samtools sort -n)"
#68
ydchung15
closed
3 years ago
2
Update README.md
#67
malcook
closed
3 years ago
1
Allow Genrich to use reads marked as duplicate
#66
dariober
closed
3 years ago
3
Narrow and Broad Peaks
#65
Carmelo-Bravo
closed
3 years ago
2
More peaks in merged replicates than the sum of single replicates
#64
amitjavilaventura
closed
3 years ago
1
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