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karel-brinda
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rnftools
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
http://karel-brinda.github.io/rnftools
MIT License
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Wrong read name - more than 2 reads in tuple?
#77
rsuchecki
opened
5 years ago
0
RNF spec inaccessible
#76
rsuchecki
closed
5 years ago
2
No output from rnftools.mishmash.DwgSim
#75
zihhuafang
opened
5 years ago
2
gnuplot error
#74
alperyilmaz
opened
5 years ago
1
Don't use absolute paths in input: / output:
#73
karel-brinda
opened
5 years ago
0
Error Producing LAVEnder Report
#72
RSherman15
opened
5 years ago
6
Add support for VCF output of DWGsim
#71
karel-brinda
closed
5 years ago
0
DWGSim hangs, then deletes files when job is killed
#70
RSherman15
closed
6 years ago
3
Pickling Error
#69
RSherman15
opened
6 years ago
5
ArtIllumina's number_of_read_tuples does not work
#68
simonepignotti
opened
6 years ago
1
max ( read_nb, (coverage * genome_size / read_len) )
#67
simonepignotti
opened
6 years ago
0
Devel linux build fails on Travis
#66
simonepignotti
opened
6 years ago
0
Use number_of_read_tuples param when greater than coverage's
#65
simonepignotti
opened
6 years ago
0
[dwgsim] 0 reads error for low coverage and short genomes
#64
simonepignotti
closed
6 years ago
1
Add support for curesim random reads
#63
karel-brinda
closed
7 years ago
0
Mark random reads that are mixed in by simulator in LRN (genome ID)
#62
sibyllewohlgemuth
closed
7 years ago
5
CIGAR extension in suffix of LRN
#61
sibyllewohlgemuth
opened
7 years ago
0
Subseq
#60
karel-brinda
closed
7 years ago
0
Update
#59
karel-brinda
closed
7 years ago
0
Minor update
#58
karel-brinda
closed
7 years ago
0
RNFtools resurrection
#57
karel-brinda
closed
7 years ago
0
rnftools liftover - AssertionError - assert (last_right1 is None) or (last_right1==left1)
#56
karel-brinda
opened
7 years ago
1
Fix subparser bug in cli variant of rnftools
#55
karel-brinda
closed
7 years ago
0
program rnftools: argparse does not work
#54
karel-brinda
closed
7 years ago
1
Dwgsim - error when 0 simulated reads
#53
karel-brinda
opened
8 years ago
0
Local variable 'single_reads_statistics' referenced before assignment
#52
karel-brinda
opened
8 years ago
1
question: how to override mapper parameters?
#51
astewart-twist
closed
7 years ago
2
Dockerization
#50
astewart-twist
closed
8 years ago
1
Any idea what this error
#49
astewart-twist
closed
7 years ago
15
Problem with mapper evaluation example?
#48
astewart-twist
closed
8 years ago
1
Pdf
#47
karel-brinda
closed
8 years ago
0
RNFtools 0.2.7
#46
karel-brinda
closed
8 years ago
0
RNFtools 0.2.6
#45
karel-brinda
closed
8 years ago
0
RNFtools 0.2.5
#44
karel-brinda
closed
8 years ago
0
LAVEnder: text log
#43
karel-brinda
closed
8 years ago
0
RNFtools 0.3
#42
karel-brinda
closed
8 years ago
0
Errors when Snakefile changed and old experiment directory kept
#41
karel-brinda
opened
8 years ago
1
Wrong RNF names in simulations using DwgSim
#40
karel-brinda
opened
8 years ago
0
_open() takes at least 1 positional argument (0 given)
#39
karel-brinda
closed
8 years ago
1
0.2.3.1
#38
karel-brinda
closed
8 years ago
0
Prevent number_of_read_tuples being equal to 0
#37
karel-brinda
closed
8 years ago
1
MIShmash: support for naming samples and additional RNF comments
#36
karel-brinda
opened
8 years ago
0
RNFtools 0.2.3
#35
karel-brinda
closed
8 years ago
0
FAQ - git behind proxy
#34
karel-brinda
closed
8 years ago
0
Art - error when coverage is too low
#33
karel-brinda
closed
8 years ago
0
FqMerger - too many open files
#32
karel-brinda
opened
8 years ago
2
MIShmash option: remove auxiliary directory
#31
karel-brinda
opened
8 years ago
0
Position of key for overall graphs
#30
karel-brinda
closed
8 years ago
0
Correct example in RNF spec (take it from the RNF paper)
#29
karel-brinda
opened
8 years ago
0
Minor update
#28
karel-brinda
closed
8 years ago
0
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