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kbaseapps
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kb_gtdbtk
GTDB-Tk App
MIT License
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PTV-1904 fix local tests
#92
briehl
opened
6 months ago
0
GTDB doesn't recognize fasta assembly type input
#91
ghost
opened
7 months ago
3
PTV-1904 fix column mismatch when merging TSV files
#90
briehl
closed
8 months ago
0
Add some linting and type hints
#89
briehl
opened
9 months ago
0
PTV-1904 fix mypy errors
#88
briehl
opened
9 months ago
0
DEVOPS-1609 Bugfix Reversion Attempt
#87
bio-boris
opened
9 months ago
0
Restore previous release 1.0.0
#86
crockettz
closed
9 months ago
0
incorporate updates module v1.1.0 - v1.4.0
#85
dcchivian
closed
10 months ago
0
record r214 std_lineage as 214.1
#84
dcchivian
closed
10 months ago
0
updated to GTDB-Tk v2.3.2 and R214
#83
dcchivian
closed
10 months ago
0
Added GTDB genome object copying and Tree viz
#82
dcchivian
closed
11 months ago
0
Fix unowned handles: PTV-1883
#81
dcchivian
closed
1 year ago
0
PTV-1868: Remove --insecure from curl command in entrypoint
#80
MrCreosote
closed
1 year ago
0
RE2022-100: Add new std_lineage fields to Genome and Assembly objects
#79
dcchivian
closed
1 year ago
0
updated taxon_assignment to GTDB_R07-RS207
#78
dcchivian
closed
1 year ago
0
Bump certifi from 2021.10.8 to 2022.12.7
#77
dependabot[bot]
opened
1 year ago
1
Add CodeQL workflow for GitHub code scanning
#76
lgtm-com[bot]
opened
1 year ago
0
Develop
#75
Tianhao-Gu
closed
1 year ago
0
docker install krona
#74
Tianhao-Gu
closed
2 years ago
0
update GTDB-Tk to v2.1.0 and Refdata to R07-RS207
#73
dcchivian
closed
2 years ago
2
review was done in patch merge to develop
#72
dcchivian
closed
2 years ago
0
add all output as zip archive to downloadable 'file_links' in report
#71
dcchivian
closed
2 years ago
0
v1.0.0 - updated to release version numbering
#70
dcchivian
closed
2 years ago
0
v1.0.0 - updated to release version numbering
#69
dcchivian
closed
2 years ago
0
update GTDB-Tk to v1.7.0 and GTDB to R06-RS202
#68
dcchivian
closed
2 years ago
0
v0.1.7 - updated GTDB-Tk to v1.7.0 and GTDB to R06-RS202
#67
dcchivian
closed
2 years ago
2
Update to version 1.3.0
#66
dcchivian
closed
2 years ago
2
Bump py from 1.8.1 to 1.10.0
#65
dependabot[bot]
closed
2 years ago
1
Run two or more assemblies on classify for kbase
#64
diegoibt
opened
3 years ago
1
update Pipfile.lock
#63
psdehal
closed
3 years ago
0
Bump to latest release version
#62
jungbluth
closed
3 years ago
2
bump dataversion
#61
psdehal
closed
4 years ago
0
Update to version 1.3.0
#60
psdehal
closed
4 years ago
0
Update to version 1.3.0
#59
psdehal
closed
4 years ago
2
Add Zach & Fix citation typo
#58
psdehal
closed
4 years ago
0
Update kbase.yml to add zach
#57
psdehal
closed
4 years ago
1
aaa
#56
Tianhao-Gu
closed
4 years ago
0
fix yaml for pubs
#55
psdehal
closed
4 years ago
0
Crockettz doc update 2
#54
crockettz
closed
4 years ago
1
Crockettz doc update 2
#53
crockettz
closed
4 years ago
1
Update display.yaml
#52
crockettz
closed
4 years ago
1
update gtdb version 1.1.0
#51
psdehal
closed
4 years ago
3
Refactor for testing
#50
MrCreosote
closed
4 years ago
0
appropriate test name
#49
MrCreosote
closed
4 years ago
2
Add docs re testing
#48
MrCreosote
closed
4 years ago
2
Add integration test
#47
MrCreosote
closed
4 years ago
1
Remove unused files, cache conda install
#46
MrCreosote
closed
4 years ago
1
Update specs
#45
MrCreosote
closed
4 years ago
2
Make current tests run under kb-sdk test
#44
MrCreosote
closed
4 years ago
1
WS URL fix
#43
MrCreosote
closed
4 years ago
2
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