kbaseapps kb_gtdbtk issues

kbaseapps / kb_gtdbtk

GTDB-Tk App

MIT License

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issues

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PTV-1904 fix local tests

#92 briehl opened 9 months ago
0
GTDB doesn't recognize fasta assembly type input

#91 ghost opened 9 months ago
3
PTV-1904 fix column mismatch when merging TSV files

#90 briehl closed 11 months ago
0
Add some linting and type hints

#89 briehl opened 11 months ago
0
PTV-1904 fix mypy errors

#88 briehl opened 11 months ago
0
DEVOPS-1609 Bugfix Reversion Attempt

#87 bio-boris opened 11 months ago
0
Restore previous release 1.0.0

#86 crockettz closed 11 months ago
0
incorporate updates module v1.1.0 - v1.4.0

#85 dcchivian closed 1 year ago
0
record r214 std_lineage as 214.1

#84 dcchivian closed 1 year ago
0
updated to GTDB-Tk v2.3.2 and R214

#83 dcchivian closed 1 year ago
0
Added GTDB genome object copying and Tree viz

#82 dcchivian closed 1 year ago
0
Fix unowned handles: PTV-1883

#81 dcchivian closed 1 year ago
0
PTV-1868: Remove --insecure from curl command in entrypoint

#80 MrCreosote closed 1 year ago
0
RE2022-100: Add new std_lineage fields to Genome and Assembly objects

#79 dcchivian closed 1 year ago
0
updated taxon_assignment to GTDB_R07-RS207

#78 dcchivian closed 1 year ago
0
Bump certifi from 2021.10.8 to 2022.12.7

#77 dependabot[bot] opened 1 year ago
1
Add CodeQL workflow for GitHub code scanning

#76 lgtm-com[bot] opened 1 year ago
0
Develop

#75 Tianhao-Gu closed 1 year ago
0
docker install krona

#74 Tianhao-Gu closed 2 years ago
0
update GTDB-Tk to v2.1.0 and Refdata to R07-RS207

#73 dcchivian closed 2 years ago
2
review was done in patch merge to develop

#72 dcchivian closed 2 years ago
0
add all output as zip archive to downloadable 'file_links' in report

#71 dcchivian closed 2 years ago
0
v1.0.0 - updated to release version numbering

#70 dcchivian closed 3 years ago
0
v1.0.0 - updated to release version numbering

#69 dcchivian closed 3 years ago
0
update GTDB-Tk to v1.7.0 and GTDB to R06-RS202

#68 dcchivian closed 3 years ago
0
v0.1.7 - updated GTDB-Tk to v1.7.0 and GTDB to R06-RS202

#67 dcchivian closed 3 years ago
2
Update to version 1.3.0

#66 dcchivian closed 3 years ago
2
Bump py from 1.8.1 to 1.10.0

#65 dependabot[bot] closed 3 years ago
1
Run two or more assemblies on classify for kbase

#64 diegoibt opened 3 years ago
1
update Pipfile.lock

#63 psdehal closed 4 years ago
0
Bump to latest release version

#62 jungbluth closed 4 years ago
2
bump dataversion

#61 psdehal closed 4 years ago
0
Update to version 1.3.0

#60 psdehal closed 4 years ago
0
Update to version 1.3.0

#59 psdehal closed 4 years ago
2
Add Zach & Fix citation typo

#58 psdehal closed 4 years ago
0
Update kbase.yml to add zach

#57 psdehal closed 4 years ago
1
aaa

#56 Tianhao-Gu closed 4 years ago
0
fix yaml for pubs

#55 psdehal closed 4 years ago
0
Crockettz doc update 2

#54 crockettz closed 4 years ago
1
Crockettz doc update 2

#53 crockettz closed 4 years ago
1
Update display.yaml

#52 crockettz closed 4 years ago
1
update gtdb version 1.1.0

#51 psdehal closed 4 years ago
3
Refactor for testing

#50 MrCreosote closed 4 years ago
0
appropriate test name

#49 MrCreosote closed 4 years ago
2
Add docs re testing

#48 MrCreosote closed 4 years ago
2
Add integration test

#47 MrCreosote closed 4 years ago
1
Remove unused files, cache conda install

#46 MrCreosote closed 4 years ago
1
Update specs

#45 MrCreosote closed 4 years ago
2
Make current tests run under kb-sdk test

#44 MrCreosote closed 4 years ago
1
WS URL fix

#43 MrCreosote closed 4 years ago
2