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kevinjohncutler
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omnipose
Omnipose: a high-precision solution for morphology-independent cell segmentation
https://omnipose.readthedocs.io
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model.eval error when not using GPU
#106
niwaka-ame
opened
2 weeks ago
0
Issue with numpy 2.0.1 - ValueError: numpy.dtype size changed
#105
Tom-TBT
closed
2 days ago
1
Models load to omnipose
#104
BornKrefeld
closed
3 weeks ago
1
Installation Omnipose GUI conflict with numpy
#103
BornKrefeld
closed
1 month ago
4
peakdetect 1.2 causes dependency conflict
#102
antonkulaga
opened
3 months ago
3
Contour missing
#101
WuJunxu
closed
1 month ago
4
Kernal crashed when running the mono_channel_bact note book on iMAC with M3 chip
#100
MoZhou519
opened
3 months ago
1
Train an Omnipose model with 3-channel input images
#99
ThaoCao
closed
3 weeks ago
1
3D Segmentation with Omnipose using 2D Cellpose models
#98
mrdandelion6
closed
1 month ago
2
Don't print message about labels when labels is None.
#97
tinevez
closed
3 months ago
0
Omnipose crash with the --verbose flag when no objects are found in an image
#96
tinevez
closed
3 months ago
0
Cellpose Extension 0.9.3 for QuPath 0.5.1 Training - Code ERROR
#95
marciaazevedo
closed
3 months ago
1
GUI Preprocessing Discrepency
#94
YashM8
closed
3 months ago
1
Segmenting 3D Tiff with plantomni: RuntimeError: Expected output.numel() <= std::numeric_limits::max() to be true, but got false.
#93
mrdandelion6
closed
3 weeks ago
3
Issues with logging into the log file
#92
JB4Jaison
opened
4 months ago
0
Flows to mask
#91
phisanti
closed
3 months ago
2
Available pretrained models discrepancy
#90
lacan
closed
3 months ago
1
GUI launch fail despite requirements satisfied
#89
JulianoGianlupi
opened
5 months ago
0
Train new modet option in GUI not active
#88
danidean
closed
4 months ago
1
Update settings.rst
#87
romainGuiet
opened
5 months ago
0
Log the validation loss when using CLI while training an omnipose model
#86
lacan
opened
5 months ago
1
Impossible to download pre-trained models
#85
TAspert
closed
5 months ago
3
CellProfiler plugin issue
#84
tsmith1711
closed
5 months ago
3
Conversion of bact_fluor_omnitorch_0 model to .onnx throws error
#83
JensWendt
closed
4 months ago
2
Testing the trained model failed on Windows
#82
sugan89
opened
6 months ago
0
macos omnipose gui make segmentation fault
#81
mxardre
opened
7 months ago
2
Error: `ModuleNotFoundError: No module named 'aicsimageio'`
#80
ElpadoCan
closed
6 months ago
1
can not download model
#79
romainGuiet
closed
5 months ago
11
ImportError: cannot import name 'ifft' from 'scipy'
#78
romainGuiet
opened
7 months ago
10
GPU support for Apple silicon
#77
phisanti
closed
5 months ago
2
Omnipose Segmentation Issue: Merging Distinct Regions as a Single Object
#76
Ati-74
closed
5 months ago
1
Question regarding returning files with no masks found
#75
GloriaAlvarado
opened
7 months ago
2
Return fields if compute_mask=False, and dependences
#74
yyang35
closed
8 months ago
1
Trained model does not work
#73
urtepuod
opened
8 months ago
2
NameError with io.save_masks
#72
ZiyangCh3n
closed
8 months ago
1
Kernel crashes when segmenting in 3D for some images but not others
#71
vhickl
closed
8 months ago
6
reproducing pretrained model
#70
dojoh
opened
8 months ago
3
Issue with Continuing Training on bact_phase_omni Model
#69
73Emilie
closed
8 months ago
4
RuntimeError when attempting training with GPU
#68
vhickl
closed
9 months ago
2
no images in --dir folder
#67
73Emilie
closed
9 months ago
2
Examples mono_channel_bact jupyter kernel crashes
#66
tensorcoder
closed
9 months ago
2
Kernel crashes when plotting segmentation results of specific image region
#65
Marco-J-K
closed
9 months ago
2
Trying to fine tune a model but it fails. I need help and guidance.
#64
fsalfonzo
opened
11 months ago
2
Setting up Omnipose with GPU support results in kernel crashes when cellpose_omni is imported
#63
Marco-J-K
opened
11 months ago
4
I don't understand the formula for diameter in the paper. Could you provide a detailed explanation of its principles?
#62
FCgogogo
closed
9 months ago
1
Omnipose not working on stacks
#61
smury
opened
11 months ago
2
Using omnipose models in Matlab Cellpose integration
#60
smury
opened
11 months ago
1
gui error: qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
#59
JunMa11
opened
11 months ago
3
FileNotFound Error while training a new model
#58
ThaoCao
opened
1 year ago
3
unrecognized arguments: --nchan
#57
bobfRT1
closed
1 year ago
2
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