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khodosevichlab
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CRMetrics
Summarization of CellRanger count metrics.
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Compatibility with 10X flex and Parse output
#53
Laura19993
opened
4 days ago
2
CRMetrics$new assignes incorrect sample ids to samples
#52
ainsku
closed
7 months ago
1
detectDoublets and addDoublets not actually calculating the doublets
#51
ainsku
closed
7 months ago
3
Prepare for upcoming Seurat v5 release
#50
Gesmira
opened
1 year ago
0
Merge dev to main
#49
rrydbirk
closed
1 year ago
0
Merge main to dev
#48
rrydbirk
closed
1 year ago
0
Merge `dev` to `main`
#47
rrydbirk
closed
1 year ago
0
Failing tests and 'ggpmisc'
#46
aphalo
closed
1 year ago
2
Merge dev to main
#45
rrydbirk
closed
1 year ago
0
Add plotMetadata function
#44
rrydbirk
opened
1 year ago
0
Add geom_boxplot to plot.geom
#43
rrydbirk
opened
1 year ago
0
Merge dev to main
#42
rrydbirk
closed
1 year ago
0
Add functionality for multiomics datasets
#41
rrydbirk
opened
2 years ago
0
Prepare for CRAN
#40
rrydbirk
closed
1 year ago
0
Create README
#39
rrydbirk
closed
2 years ago
1
Add parameters for nested functions
#38
rrydbirk
closed
2 years ago
2
Allow for data.path = NULL
#37
rrydbirk
closed
2 years ago
1
Add functionality for variable mito.fraction vector
#36
rrydbirk
closed
2 years ago
3
Streamline parameter naming
#35
rrydbirk
closed
2 years ago
1
Update testdata that can be used with CellBender
#34
rrydbirk
closed
2 years ago
1
Added SoupX functionality
#33
rrydbirk
closed
2 years ago
0
Cellbender
#32
rrydbirk
closed
2 years ago
0
DoubletDetection introduces NA incomatible with sparse Matrices
#31
FFriis
closed
2 years ago
2
$filterCms function mixes up sample order for filtering
#30
FFriis
closed
2 years ago
2
Create addCms function
#29
rrydbirk
closed
2 years ago
1
Depth cutoff vector
#28
rrydbirk
closed
2 years ago
2
Documentation
#27
rrydbirk
closed
2 years ago
2
CM import function
#26
rrydbirk
closed
2 years ago
1
Clean up count matrices
#25
rrydbirk
closed
2 years ago
1
Functionality for plotting mitochondrial fraction
#24
rrydbirk
closed
2 years ago
1
plotDepth per sample omits samples
#23
rrydbirk
closed
2 years ago
1
Allow metadata object
#22
rrydbirk
closed
2 years ago
1
Function names
#21
rrydbirk
closed
2 years ago
2
add_column not found when knitting vignette_15q markdown
#20
flkick
closed
2 years ago
1
knitting vignettes
#19
HenriettaHolze
closed
2 years ago
2
Conos UMAP
#18
flkick
closed
2 years ago
2
log scale for detailed plots
#17
HenriettaHolze
closed
2 years ago
0
doublet detection
#16
HenriettaHolze
closed
2 years ago
3
Depth plot + conos umap
#15
HenriettaHolze
closed
2 years ago
3
Make second level of comparison optional in sample plot
#14
HenriettaHolze
closed
2 years ago
0
parameters for stat test and significance
#13
HenriettaHolze
closed
2 years ago
0
Generalized plotting function for summary statistics
#12
HenriettaHolze
closed
2 years ago
0
Sample exclusion column in metadata
#11
HenriettaHolze
closed
2 years ago
1
Make metadata optional
#10
HenriettaHolze
closed
2 years ago
1
Improve reading detailed metrics
#9
HenriettaHolze
closed
2 years ago
4
Convert to package
#8
flkick
closed
2 years ago
0
mean genes per sample
#7
XianXin0418
closed
2 years ago
1
Number of cells per sample
#6
flkick
closed
2 years ago
1
Object oriented
#5
HenriettaHolze
closed
2 years ago
0
Cannot read in count matrices
#4
HenriettaHolze
closed
2 years ago
5
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