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kids-first
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kf-alignment-workflow
:microscope: Alignment workflow for Kids-First DRC
Apache License 2.0
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:brain: memory hook for dedup
#144
dmiller15
opened
5 days ago
0
๐ง adjust t1k memory
#143
dmiller15
closed
2 weeks ago
0
๐ bump to release 2.11.0
#142
dmiller15
closed
2 months ago
0
๐ update reference names and links
#141
dmiller15
closed
3 months ago
1
Update Production WF Docker Tables
#140
github-actions[bot]
closed
4 months ago
0
Update Production WF Docker Tables
#139
github-actions[bot]
closed
4 months ago
0
๐ add t1k to alignment
#138
dmiller15
closed
4 months ago
0
๐ open bam processing resource ins
#137
dmiller15
closed
7 months ago
5
๐ enforce array length
#136
dmiller15
closed
8 months ago
0
๐ alignment workflow cwltool compatibility
#135
dmiller15
closed
8 months ago
0
Update Production WF Docker Tables
#134
github-actions[bot]
closed
8 months ago
0
๐ค add docker table builder gha
#133
dmiller15
closed
8 months ago
0
โ๏ธ add cutadapt
#132
dmiller15
closed
8 months ago
0
๐ sentieon alignment cleanup
#131
dmiller15
closed
8 months ago
1
๐ bump for 2.9.1
#130
dmiller15
closed
1 year ago
0
๐ remove merge nested
#129
dmiller15
closed
1 year ago
0
๐ add sex stats to cram2gvcf;
#128
dmiller15
closed
1 year ago
0
๐ add sentieon gvcf workflow
#127
dmiller15
closed
1 year ago
0
๐ drop cram bai
#126
dmiller15
closed
1 year ago
0
๐ bamtofastq cpu port open
#125
dmiller15
closed
1 year ago
0
๐ช Improve instance usage to balance speed and cost
#124
migbro
closed
2 years ago
0
๐ sync alignment wf output names
#123
dmiller15
closed
2 years ago
0
๐ Added input cram support
#122
migbro
closed
2 years ago
0
๐ sentieon release prep
#121
dmiller15
closed
2 years ago
0
๐ sentieon wf
#120
dmiller15
closed
2 years ago
1
๐จ sbpack fixes
#119
dmiller15
closed
2 years ago
1
Update picard docker
#118
sickler-alex
closed
3 years ago
3
๐ expression fix
#117
dmiller15
closed
3 years ago
0
๐ Update Suggested File Paths
#116
dmiller15
closed
3 years ago
0
As qc wf
#115
sickler-alex
closed
3 years ago
1
โจ added xy ratio calculation tool
#114
dmiller15
closed
3 years ago
2
Sync PR Template with Template Repo
#113
github-actions[bot]
closed
3 years ago
1
Sync PR Template with Template Repo
#112
github-actions[bot]
closed
3 years ago
0
๐ฌ add sync action
#111
dmiller15
closed
3 years ago
1
๐ฒ hc wf and alignemnt use same subwf
#110
dmiller15
closed
3 years ago
0
As qc wf
#109
sickler-alex
closed
3 years ago
0
Add qc extras
#108
sickler-alex
closed
3 years ago
1
:zap: change fastqc tool to take parameter file as input
#107
sickler-alex
closed
3 years ago
0
Add fastqc
#106
sickler-alex
closed
3 years ago
0
๐ณ ubuntu imgae registry changed
#105
dmiller15
closed
3 years ago
0
๐ณ dockerPull from new registry
#104
dmiller15
closed
3 years ago
2
๐ convert cram to gvcf to public app
#103
dmiller15
closed
4 years ago
0
๐ท update link to latest release
#102
dmiller15
closed
4 years ago
0
๐ rg exptool for cavatica bug
#101
dmiller15
closed
4 years ago
0
โฉ๏ธ return to expressiontool for renamesample
#100
dmiller15
closed
4 years ago
4
๐งน cleanup cwl ids
#99
dmiller15
closed
4 years ago
0
๐ฅMb merge public-production app
#98
migbro
closed
4 years ago
0
โจ GATK HC CRAM to gVCF Standalone
#97
dmiller15
closed
4 years ago
2
๐ช๐ธ cwltool compatibility
#96
dmiller15
closed
4 years ago
0
๐ Public App File Index Handling
#95
dmiller15
closed
4 years ago
4
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