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ktmeaton
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ncov-recombinant
Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
MIT License
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Use pango-sequences data as controls
#242
ktmeaton
opened
1 year ago
0
IndexError: list index out of range
#241
ktmeaton
opened
1 year ago
0
Investigate use of freyja barcodes
#240
ktmeaton
opened
1 year ago
0
Nextclade dataset download error
#239
ktmeaton
opened
1 year ago
0
v0.7.0 Redo Release
#238
ktmeaton
closed
1 year ago
0
Recombinant aliases (EK = XBB.1.5.13)
#237
ktmeaton
opened
1 year ago
0
Make metadata 100% optional.
#236
ktmeaton
opened
1 year ago
0
Investigate the incorporation of OpenRDP
#235
ktmeaton
closed
1 year ago
0
Add XBF to sc2rf voc-2023 now that is a VUM according to WHO
#234
ktmeaton
opened
1 year ago
0
proposed1658 | BQ.1.8, XBF(?) or CJ.1(?)
#233
ktmeaton
opened
1 year ago
1
v0.7.0 Release
#232
ktmeaton
closed
1 year ago
2
AttributeError: 'NoneType' object has no attribute 'startswith'
#231
ktmeaton
closed
1 year ago
0
Add citation CFF
#230
ktmeaton
opened
1 year ago
0
Auto-pass sc2rf negatives are missing when exclude_negatives is set to true
#229
ktmeaton
closed
1 year ago
2
VirusSeq Canada
#228
ktmeaton
closed
1 year ago
2
Immune Escape Ranking
#227
ktmeaton
opened
1 year ago
1
VOC 2023
#226
ktmeaton
opened
1 year ago
0
validate doesn't check status
#225
ktmeaton
closed
1 year ago
0
UserWarning: Tight layout not applied. The bottom and top margins cannot be made large enough to accommodate all axes decorations.
#224
ktmeaton
closed
1 year ago
1
CI: setup-miniconda failure
#223
ktmeaton
closed
1 year ago
0
Add GISAID accessKey option for sc2rf
#222
ktmeaton
closed
1 year ago
0
Provider more parameters to plot and plot_historical to reduce clutter
#221
ktmeaton
closed
1 year ago
0
proposed1576 | BA.5.2/BA.2.75/BA.5.2
#220
ktmeaton
closed
1 year ago
0
XBL | BA.2.75/XBB.1
#219
ktmeaton
closed
1 year ago
0
pandas.errors.PerformanceWarning: DataFrame is highly fragmented.
#218
ktmeaton
closed
1 year ago
4
XBB.1.5 | BA.2.10/BA.2.75
#217
ktmeaton
closed
1 year ago
0
proposed1444 | BA.2.75/BQ.1
#216
ktmeaton
closed
1 year ago
0
XBM | BA.2.76/BF.3
#215
ktmeaton
closed
1 year ago
0
proposed1440 | CJ.1/BA.5.2
#214
ktmeaton
closed
1 year ago
0
XBK | BA.5.2/CJ.1
#213
ktmeaton
closed
1 year ago
3
proposed1425 | BA.2.75/BQ.1
#212
ktmeaton
closed
1 year ago
0
XBP | BA.2.75/BQ.1
#211
ktmeaton
closed
1 year ago
1
Handle numeric strain names, int object has no attribute split
#210
ktmeaton
closed
1 year ago
0
RBD level color palette
#209
ktmeaton
closed
1 year ago
0
proposed1340 | BN.1.3/XBB.1
#208
ktmeaton
closed
1 year ago
0
proposed1332
#207
ktmeaton
closed
1 year ago
0
XBG | BA.2.76/BA.5.2
#206
ktmeaton
closed
1 year ago
0
Conflicting results between parent_clade and parent_lineage
#205
ktmeaton
closed
1 year ago
0
XBB-like ARTIC v4.1 Dropout
#204
ktmeaton
closed
1 year ago
3
proposed1305
#203
ktmeaton
closed
1 year ago
0
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='lapis.cov-spectrum.org'): Max retries exceeded with url
#202
ktmeaton
closed
1 year ago
0
Make LAPIS query of covSPECTRUM optional
#201
ktmeaton
closed
1 year ago
0
Automatically create lineage report
#200
ktmeaton
closed
1 year ago
1
XBJ | BA.2.3/BA.5.2
#199
ktmeaton
closed
1 year ago
1
XBH | BA.2.3.17/BA.2.75
#198
ktmeaton
closed
1 year ago
1
XBN | BA.2.75/XBB.3
#197
ktmeaton
closed
1 year ago
0
XBF | BA.5.2.1*,BA.2.75*
#196
ktmeaton
closed
1 year ago
0
Ratio of parental alleles to intermissions
#195
ktmeaton
closed
1 year ago
5
Growth advantage and distribution fitting
#194
ktmeaton
closed
1 year ago
2
Add RBD Level and immune-related stats
#193
ktmeaton
closed
1 year ago
2
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