laminlabs lamindb issues

laminlabs / lamindb

A data framework for biology.

https://docs.lamin.ai

Apache License 2.0

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issues

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Loading dataset from a different instance that does not have all schemas of the current instance errors

#2117 Zethson closed 3 weeks ago
7
♻️ Refactor imports and update upath code

#2116 Koncopd closed 4 weeks ago
2
✨ Stream `pyarrow.dataset` via `Artifact.open()`

#2115 Koncopd closed 4 weeks ago
2
⬆️ Upgrade lamindb-setup

#2114 Koncopd closed 1 month ago
2
Importing Curator objects without an active instance - improving gating

#2113 Zethson opened 1 month ago
0
Reduce verbosity of `.describe()`

#2112 Zethson opened 1 month ago
0
✨ Need an optional way of copying data during transfer

#2111 falexwolf opened 1 month ago
0
Repeated `validate()` calls result in repeated stdout of `saving validated terms of XYZ`

#2110 Zethson closed 2 weeks ago
0
Improve documentation of Curator

#2109 Zethson opened 1 month ago
0
`add_validated_from_var_index` is suggested but it doesn't even exist anymore

#2108 Zethson opened 1 month ago
1
🐛 Proper numerous for Curator stdout

#2107 Zethson closed 1 month ago
2
✨ Recursively query parents and children

#2106 Koncopd closed 1 month ago
4
✨ Raise TypeError if a string is passed to `var_index` of `AnnDataCurator`

#2105 Zethson closed 2 weeks ago
3
✨ Truncate standardization output

#2103 Zethson closed 3 weeks ago
3
Robust support of validating multiple values

#2101 sunnyosun opened 1 month ago
1
🐛 `print_types=True` seems to lead to weird output on main branch, it's OK in the release

#2100 falexwolf opened 1 month ago
1
Curator validated logging not working?

#2099 Zethson opened 1 month ago
2
Cannot validate genes stored in DataFrame

#2098 Zethson closed 3 weeks ago
0
✨ Add n_observations function to read n_obs from AnnData and tiledbsoma

#2097 Koncopd opened 1 month ago
7
✨ Restrict stdout of validation messages of Curator to max 10 terms

#2094 Zethson closed 1 month ago
2
Warn if working with a non-latest version of an artifact

#2093 Koncopd opened 1 month ago
0
✨ Python 3.12 support

#2092 Zethson closed 4 weeks ago
7
AttributeError: 'str' object has no attribute 'field' when passing "symbol" instead of "bt.Gene.symbol"

#2091 Zethson closed 2 weeks ago
0
integrity error when trying to save genes after they've been saved already

#2090 Zethson closed 4 days ago
11
🐛 Fix TypeError

#2089 Zethson closed 1 month ago
2
TypeError: AnnDataCurator._update_registry_all() got an unexpected keyword argument 'validated_only' when running curator.add_new_from("all")

#2088 Zethson closed 1 month ago
1
⬆️ Remove the pin on scipy

#2087 Koncopd closed 1 month ago
2
🔊 Raise ValidationError

#2086 sunnyosun closed 1 month ago
2
🔇 Fix Curator logging

#2085 sunnyosun closed 1 month ago
2
🚸 Unnecessarily verbose logging in `Curator`

#2084 falexwolf closed 1 month ago
0
💚 Fix docs

#2083 falexwolf closed 1 month ago
2
🎨 Fix Curator.from_mudata

#2082 sunnyosun closed 1 month ago
2
🔥 Remove `Curator.add_validated_from()`

#2081 sunnyosun closed 1 month ago
3
✨ Enable curating multiple categorical features per artifact against the same label registry

#2080 falexwolf closed 1 month ago
2
Discrepancy in behavior of validate in Curator and low level API for Pandas NAs

#2079 Zethson opened 1 month ago
0
Unable to pin Compound source when it has chebi source attached

#2078 Zethson opened 1 month ago
0
✨ Add `Collection.append()`

#2077 Koncopd closed 1 month ago
9
🐛 Second cell type feature doesn't show up in describe upon re-curation

#2076 falexwolf closed 1 month ago
0
🚸 Duplicated logging message about where artifact will be stored

#2075 falexwolf opened 1 month ago
0
🚸 Throw a `ValidationError` instead of `ValueError` when trying to re-assigning synonyms

#2074 falexwolf closed 1 month ago
1
🚸 Enabling to append to a collection

#2073 falexwolf closed 4 weeks ago
1
🚸 Raise a `ValidationError` rather than a `ValueError`

#2072 falexwolf closed 1 month ago
0
🚸 Indenting and relevance

#2071 falexwolf closed 3 weeks ago
3
🚸 Why do I get an option to look up values?

#2070 falexwolf closed 1 month ago
1
⚡ Deleting a transform is slow

#2069 falexwolf opened 1 month ago
0
📝 Improve the "Lamin Process" graphic of the API

#2068 falexwolf opened 1 month ago
1
Better error message when a label is not saved and user tries to annotate with it

#2067 falexwolf opened 1 month ago
0
🎨 Integrate `nbproject` into `lamindb`

#2066 Koncopd opened 1 month ago
2
♻️ Integrate nbproject utilities into lamindb

#2065 Koncopd closed 1 month ago
0
🐛 Fix tracking of notebooks on PyCharm

#2064 Koncopd closed 1 month ago
2

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