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logsdon-lab
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CenMAP
Centromere mapping and annotation pipeline
MIT License
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Read alignment memory is not configurable
#30
koisland
closed
5 months ago
1
bugfix: Remove Reads Conversion and Various Bugfixes/Improvements
#29
koisland
closed
5 months ago
0
feat: Quality-of-life Improvements and Cleaner Organization
#28
koisland
closed
5 months ago
0
feat: Specify Read Extension
#27
koisland
closed
5 months ago
0
feat: Centromere Clustering
#26
koisland
closed
5 months ago
0
feat: Alpha-satellite HOR Array Length Plots
#25
koisland
closed
5 months ago
0
Various Bugfixes
#24
koisland
closed
5 months ago
0
Adjust chr20 pq-arm Coordinates and Small Fixes
#23
koisland
closed
5 months ago
0
Better dna-brnn output filtering
#22
koisland
closed
5 months ago
0
Quality-of-Life Improvements and Bugfixes
#21
koisland
closed
5 months ago
0
Automation, Refactoring, and Mismap Fixes
#20
koisland
closed
5 months ago
0
Building Centromere Figures and AS-HOR Length Calculation
#19
koisland
closed
6 months ago
0
Renaming contigs removes multiple mappings
#18
koisland
closed
5 months ago
0
Allow specifying StainedGlass output directory
#17
koisland
closed
6 months ago
1
Correct centromere counts includes partial centromere contigs
#16
koisland
closed
5 months ago
0
Centromere status checker doesn't include chrY CHM13 reference.
#15
koisland
closed
5 months ago
0
Low threshold length for `calculate_HOR_lengths.py`
#14
koisland
closed
5 months ago
0
dna-brnn filtering step omits contigs incorrectly by length
#13
koisland
closed
5 months ago
0
Plot Centromere StainedGlass and Bug-Fixes
#12
koisland
closed
7 months ago
0
Plot Satellite RepeatMasker Annotations
#11
koisland
closed
7 months ago
0
Centromere Status Checker and Modular HumAS-HMMER Workflow
#10
koisland
closed
7 months ago
0
ALR Incomplete Contig Filter
#9
koisland
closed
7 months ago
0
HOR StV Plotting Workflow
#8
koisland
closed
7 months ago
0
Auto Reorient Cens
#7
koisland
closed
7 months ago
0
HumAS-HMMER Workflow
#6
koisland
closed
7 months ago
0
RepeatMasker Workflow
#5
koisland
closed
7 months ago
0
NucFreq
#4
koisland
closed
7 months ago
0
CI Workflow
#3
koisland
closed
7 months ago
0
dna-brnn and nucfreq workflow cleanup
#2
koisland
closed
7 months ago
0
Use/test bedminmax script.
#1
koisland
closed
7 months ago
0
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