monarch-initiative mondo-ingest issues

monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources

https://monarch-initiative.github.io/mondo-ingest/

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issues

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Grouping: `requirements.txt`

#660 joeflack4 opened 2 months ago
0
Rename requirements file: apple-silicon -> arm64

#659 joeflack4 closed 1 month ago
0
Drop `requirements.txt` or rename to `requirements-x86-64.txt`

#658 joeflack4 opened 2 months ago
0
Keep `requirements.txt` in sync w/ ODK

#657 joeflack4 opened 2 months ago
0
Synonyms getting dropped when making component

#656 joeflack4 closed 2 months ago
2
Build on `develop` and `main` fails - undeclared synonym type: http://purl.obolibrary.org/obo/mondo#abbreviation

#655 twhetzel closed 3 weeks ago
6
DO NOT MERGE - Docs goals updates - build

#654 joeflack4 opened 2 months ago
0
Build - Sep 2024 (second iteration)

#653 twhetzel closed 2 months ago
0
Synonym sync: Abbreviation exclusions

#652 joeflack4 closed 1 week ago
0
Build - Sep 2024 files

#651 twhetzel closed 2 months ago
0
Add exclusion rules to mondo-excluded-values.yml

#650 matentzn opened 2 months ago
0
DO NOT MERGE - Replace `bioregistry` dependency with `curies` - build

#649 joeflack4 closed 2 months ago
0
Replace `bioregistry` dependency with `curies`

#648 joeflack4 closed 2 months ago
0
Ensure `robot remove --trim` usage is correct for all sources

#647 joeflack4 opened 3 months ago
0
Add draft reference for excluded values

#646 matentzn closed 3 months ago
2
Bugfix: Mondo artefacts refresh

#645 joeflack4 closed 3 months ago
0
NEVER MERGE: Externalclingenefo DATA BUILD

#644 matentzn closed 3 months ago
1
DO NOT MERGE Build refactor git refresh

#643 matentzn closed 3 months ago
1
Problematic exclusions codestyle updates

#642 joeflack4 closed 3 months ago
0
account for mirror source content with rdfs:label or skos:prefLabel

#641 twhetzel closed 3 months ago
0
DO NOT MERGE - Feature branch build for issue-638

#640 twhetzel closed 3 months ago
1
Synchronization: Synonyms - `synonym_type`

#639 joeflack4 closed 3 months ago
4
Update problematic_exclusions.py due to error with icd11.foundation

#638 twhetzel closed 3 months ago
1
TEST Build from main branch with code updates to icd11 component goal and problematic exclusion script

#637 twhetzel closed 3 months ago
1
DO NOT MERGE - `fatal: detected dubious ownership in repository` - build

#636 joeflack4 closed 3 months ago
1
DO NOT MERGE - Bug fix: "ICD11 label not found" RuntimeError - build

#635 joeflack4 closed 3 months ago
2
Bug fix: ICD11 "label not found" `RuntimeError`

#634 joeflack4 closed 3 months ago
2
`fatal: detected dubious ownership in repository`

#633 joeflack4 closed 3 months ago
12
`fatal: detected dubious ownership in repository`

#632 joeflack4 closed 3 months ago
1
TEST Data build fix-ncit-synonyms feature branch

#631 twhetzel closed 3 months ago
0
Benign attempt to resolve strange `LF` --> `CRLF` issue on Joe's machine

#630 joeflack4 opened 3 months ago
4
Data Build to (commit) merge into main

#629 twhetzel closed 3 months ago
1
Upgrade externally managed content

#628 matentzn closed 3 days ago
12
Migration: clearly distinguish which disease ID a specific Mondo ID _was sourced_ from

#627 matentzn opened 3 months ago
6
Migration table: add provenance to definitions!

#626 matentzn opened 3 months ago
4
Synchronising OMIM Included terms correctly

#625 matentzn opened 3 months ago
1
TEST Build on Develop branch

#624 twhetzel closed 3 months ago
0
Create a report to evaluate obsolete replacement relations

#623 sabrinatoro opened 3 months ago
2
ODK 1.5.3 & Replace jinja2 with Jinjanator

#622 matentzn closed 2 weeks ago
1
Test GH action, etc

#621 joeflack4 opened 4 months ago
0
DO NOT MERGE - Test Build from branch `fix-odk-version`

#620 twhetzel closed 4 months ago
0
Faster builds: Decoupled `mondo` repo artefacts

#619 joeflack4 opened 4 months ago
9
Creating a "delta" between the ORION and Monarch-Ingest pipelines.

#618 DnlRKorn closed 4 months ago
0
DO NOT MERGE - OMIM: Annotated 'included' synonyms using a different property - build

#617 joeflack4 closed 4 months ago
0
OMIM: Annotated 'included' synonyms using a different property

#616 joeflack4 closed 4 months ago
2
Create a simple list of prefixes as part of each release

#615 matentzn opened 4 months ago
1
Add documentation page for developers how to run a Mondo Ingest release

#614 matentzn opened 4 months ago
1
Ensure that exact synonyms in NCIT are preserved

#613 matentzn closed 3 months ago
2
Synonyms missing from `components/ncit.owl`

#612 joeflack4 closed 3 months ago
5
Rebuild following alignment of OMIM and ORDO

#611 twhetzel closed 4 months ago
0

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