msneddon nfsim issues - Githubissues

msneddon / nfsim

A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

MIT License

17 stars 18 forks source link

issues

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Merging the branch made to fix the seg fault and the changes to validate.py

#24 aadibiasi closed 4 months ago
0
Add G++ 9.3.0 and CMake support

#23 rasi closed 3 years ago
1
NFsim not making species file

#22 mcencer closed 5 years ago
1
Dead code removal

#21 jesperromers opened 7 years ago
0
Clang compatibility

#20 jesperromers closed 7 years ago
1
Clang compatibility

#19 jesperromers closed 7 years ago
3
update to MIT License

#18 msneddon closed 7 years ago
0
Local function on Molecular scope not evaluated with -nocslf flag set

#17 msneddon opened 8 years ago
1
Addressing bug first reported by Bill Hlavacek

#16 jjtapia closed 4 months ago
0
Bugfix for handling reaction-molecule mapping with complex symmetry issues

#15 jjtapia closed 9 years ago
0
Bugfix for handling reaction-molecule mapping with complex symmetry issues

#14 jjtapia closed 9 years ago
3
Addressing a case where a molecule agent can map to a reaction more than once

#13 jjtapia closed 9 years ago
0
Local functions on products

#12 GoogleCodeExporter opened 9 years ago
2
Pattern matching problems

#11 GoogleCodeExporter opened 9 years ago
0
Component labels (tags) are not being handled properly

#10 GoogleCodeExporter opened 9 years ago
0
Support for inline local functions

#9 GoogleCodeExporter opened 9 years ago
0
Multiple bonds per component

#8 GoogleCodeExporter closed 9 years ago
1
"Safe" mode for NFsim UTL parameter

#7 GoogleCodeExporter opened 9 years ago
3
NFsim unable to process XML from BNG if using PLUS/MINUS operators and generate_network() called before writeXML()

#6 GoogleCodeExporter opened 9 years ago
1
'stop_if' argument not supported

#5 GoogleCodeExporter opened 9 years ago
1
Sample times in NFsim

#4 GoogleCodeExporter opened 9 years ago
1
Trajectory continuation with NFsim

#3 GoogleCodeExporter opened 9 years ago
2
Molecularity is not enforced on the product side of reaction rules

#2 GoogleCodeExporter opened 9 years ago
0
Upgrade to muParser 2.2.3

#1 GoogleCodeExporter opened 9 years ago
1