issues
search
nf-core
/
kmermaid
k-mer similarity analysis pipeline
https://nf-co.re/kmermaid
MIT License
19
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add a new release for kmermaid
#109
pranathivemuri
opened
4 years ago
0
merge aligned and unaligned k-mer signatures from single cells
#108
olgabot
closed
3 years ago
3
update sencha version
#107
pranathivemuri
closed
4 years ago
3
no single_ksize, single_molecule, single_log2_sketch_num_hashes for bam
#106
olgabot
closed
4 years ago
1
Increase CPUs, memory, and time for SortMeRNA
#105
olgabot
closed
4 years ago
0
correcting versions and use if not skip_multiqc
#104
pranathivemuri
closed
4 years ago
1
Use ripgrep to make per-cell fastqs
#103
olgabot
closed
4 years ago
1
Use combine instead of each
#102
olgabot
closed
4 years ago
2
Make cartesian product of molecule, ksize, sketchsize outside of "sourmash compute" command
#101
olgabot
closed
3 years ago
0
no single_ksize, single_molecule, single_log2_sketch_num_hashes for bam
#100
olgabot
closed
4 years ago
1
tests take too long to run
#99
phoenixAja
closed
4 years ago
1
removed old sourmash bam2fasta code
#98
phoenixAja
closed
4 years ago
1
Per cell bams
#97
lekhakaranam
closed
4 years ago
0
Add option to make per-cell bam files
#96
olgabot
opened
4 years ago
2
Save sample id to sketch
#95
olgabot
closed
4 years ago
1
updated sencha translate branch
#94
pranathivemuri
closed
4 years ago
0
Template merge
#93
lekhakaranam
closed
4 years ago
8
No TEMPLATE branch
#92
ewels
closed
3 years ago
3
Output to flat directories with sketch ids
#91
olgabot
closed
4 years ago
0
Fix file() issues for S3 outputs
#90
olgabot
closed
3 years ago
3
Template merge
#89
lekhakaranam
closed
4 years ago
3
non-coding sourmash compute
#88
pranathivemuri
closed
4 years ago
3
sourmash compute nucleotide was getting skipped but not peptide - fix the logic for it
#87
pranathivemuri
closed
4 years ago
4
Add workflow overview image
#86
olgabot
closed
4 years ago
8
adding skip compute
#85
pranathivemuri
closed
4 years ago
3
lsf yml
#84
lekhakaranam
closed
4 years ago
4
Propagate peptide ksize to sencha translate
#83
olgabot
closed
4 years ago
3
Increase CPUs for high_memory_long
#82
olgabot
closed
4 years ago
0
Add option to use --scaled for sourmash
#81
olgabot
closed
4 years ago
4
Add option to remove ribosomal reads
#80
olgabot
closed
4 years ago
1
add skip compare
#79
pranathivemuri
closed
4 years ago
3
Add --scaled option for sketches
#78
olgabot
closed
4 years ago
5
Dependencies for removing ribosomal reads
#77
olgabot
closed
4 years ago
0
Add `sourmash index` option
#76
olgabot
opened
4 years ago
1
Add option to skip compare
#75
olgabot
closed
4 years ago
3
Add sortMeRNA for removing ribosomal reads
#74
olgabot
closed
4 years ago
2
Re-add --protein_fastas option
#73
olgabot
closed
4 years ago
1
BUG: `--peptide_fasta` is only for translation
#72
olgabot
closed
4 years ago
1
change khtools to sencha
#71
pranathivemuri
closed
4 years ago
0
Output ALL aligned reads from samtools_fastq_aligned
#70
olgabot
closed
4 years ago
2
Revert "[MRG] check for file size 0 "
#69
olgabot
closed
4 years ago
3
add the correct tags, remove one_signature_per_record, and add the correct size comparison if else loop
#68
pranathivemuri
closed
4 years ago
3
[MRG] check for file size 0
#67
pranathivemuri
closed
4 years ago
1
trigger dev build again
#66
pranathivemuri
closed
4 years ago
0
Update sourmash version
#65
olgabot
closed
4 years ago
0
correct spelling and trigger docker build
#64
pranathivemuri
closed
4 years ago
0
[WIP] Adding 10x gz changes with python files moved to bam2fasta repo
#63
pranathivemuri
closed
4 years ago
6
trigger docker build on dev
#62
pranathivemuri
closed
4 years ago
0
Start rewriting for bam2fasta
#61
olgabot
closed
4 years ago
1
[WIP] add bam2fasta changes - need to push docker again
#60
pranathivemuri
closed
4 years ago
2
Previous
Next