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nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
244
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192
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CI Runs failing due to (potential) bug in utils method for fetching repo releases
#3264
awgymer
opened
1 month ago
0
Un-informative error message from strange linting runs
#3263
fasterius
closed
2 weeks ago
1
nf-core pipeline lint gives cryptic prettier error message
#3262
marrip
opened
1 month ago
7
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261
Joon-Klaps
opened
1 month ago
1
3257 - Add linkify version to fix bioconda dependencies
#3260
pmoris
closed
1 month ago
3
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3259
Joon-Klaps
opened
1 month ago
0
Provide novel tooling for regulatory needs
#3258
apeltzer
opened
1 month ago
1
ModuleNotFoundError for nf-core v3.0.2 installed from bioconda
#3257
pmoris
closed
1 month ago
4
1929: local modules use remote format from template
#3256
awgymer
opened
1 month ago
2
Template: Add resource limits to Gitpod profile
#3255
mahesh-panchal
closed
1 month ago
4
Pipeline creation should specify branch name when initialising git repository
#3254
alexlyttle
opened
1 month ago
0
nf-core pipelines bump-versions doesn't update .nf-core.yml
#3253
jfy133
closed
1 month ago
2
Template fails linting/pre-commit
#3252
alexlyttle
closed
2 weeks ago
1
nf-core modules create tool/subtool should make a main.nf in a subfolder of subtool in pipelines
#3251
mahesh-panchal
closed
1 month ago
2
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1
#3250
renovate[bot]
closed
1 month ago
2
chore(deps): update github actions
#3249
renovate[bot]
closed
1 month ago
1
Modules meta.yml differentiate between tuple and single element channels
#3248
mirpedrol
opened
1 month ago
0
add `--dir/-d` option to schema commands
#3247
mashehu
closed
1 month ago
4
Modules: add a panel around diff previews when updating
#3246
mashehu
closed
1 month ago
9
nf-core pipelines bump-version doesn't consider skipped features
#3245
mashehu
opened
1 month ago
0
Download: Seqera container support - Patch 1
#3244
MatthiasZepper
closed
1 month ago
1
Adopt nf-test sharding
#3243
edmundmiller
opened
1 month ago
3
Seqera containers example
#3242
pinin4fjords
closed
1 month ago
1
Remove defaults conda channel from pipeline template
#3241
ktmeaton
closed
1 month ago
3
📦 Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog]
#3240
mashehu
closed
5 days ago
2
Add a separater between each module's set of diffs during 'preview changes' during module updates
#3239
jfy133
opened
1 month ago
1
Revert "Add new command `nf-core rocrate` to create a Research Object (RO) crate for a pipeline" [skip changelog]
#3238
mashehu
closed
1 month ago
4
Update GitHub Actions
#3237
renovate[bot]
closed
1 month ago
0
Update pre-commit hook pre-commit/mirrors-mypy to v1.13.0
#3236
renovate[bot]
closed
1 month ago
0
TEMPLATE: fix worklfow_dispatch trigger and parse more review comments in awsfulltest
#3235
mashehu
closed
1 month ago
0
`--dir / -d` argument not available for `pipeplines schema lint, validate, docs`
#3234
nschan
closed
1 month ago
0
use correct profile options for sfw test command
#3233
mashehu
closed
1 month ago
0
Update python:3.12-slim Docker digest to 032c526
#3232
renovate[bot]
closed
1 month ago
1
Fix typos
#3231
mribeirodantas
closed
1 month ago
0
Update pre-commit hook pre-commit/mirrors-mypy to v1.12.0
#3230
renovate[bot]
closed
1 month ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0
#3229
renovate[bot]
closed
1 month ago
0
allow mixed str and dict in lint config
#3228
mashehu
closed
9 hours ago
3
Fix pydantic dump
#3227
mashehu
closed
1 month ago
1
create: add shortcut to toggle all switches
#3226
mashehu
closed
1 month ago
2
Template: Do not assume pipeline name is url
#3225
maxulysse
closed
1 month ago
1
Template: Fix Manifest DOI text
#3224
maxulysse
closed
1 month ago
0
TEMPLATE: Keep pipeline name in version.yml file
#3223
maxulysse
closed
1 month ago
2
nf-core pipelines launch CLI issue
#3222
rhassaine
opened
1 month ago
0
bump version to 3.0.3dev
#3221
mashehu
closed
1 month ago
1
Include .nf-core.yml in `nf-core pipelines bump-version`
#3220
mashehu
closed
1 month ago
1
Dev -> main for 3.0.2
#3219
mashehu
closed
1 month ago
1
Template: fix pre-commit lining failing on pipelines template
#3218
mirpedrol
closed
1 month ago
0
disable automatic sync on release, fix handling empty pipeline input
#3217
mashehu
closed
1 month ago
0
bump version to 3.0.2 [skip changelog]
#3216
mirpedrol
closed
1 month ago
1
Use updated pipeline commands in docstrings
#3215
mashehu
closed
1 month ago
0
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