ocbe-uio DIscBIO issues

ocbe-uio / DIscBIO

A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics

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issues

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Remove philentropy dependency

#44 wleoncio closed 10 months ago
3
Remove 1 dependency

#43 wleoncio closed 12 months ago
0
Prepare for upcoming Seurat v5 release

#42 Gesmira closed 12 months ago
2
Loading count matrix from 10x dataset in DIscBIO

#41 abhisheksinghnl closed 12 months ago
6
Binder failing to start

#40 wleoncio closed 2 years ago
0
Binder links on README point to dev

#39 wleoncio opened 2 years ago
0
Fix linting

#38 wleoncio closed 12 months ago
0
Unit tests failing

#37 wleoncio closed 12 months ago
0
Added link to paper

#36 wleoncio closed 3 years ago
1
Implementing GitHub actions

#35 wleoncio closed 2 years ago
1
Recreate unit tests

#34 wleoncio closed 3 years ago
0
The PPI function is writing to the user's disk

#33 wleoncio closed 3 years ago
4
Aggregate K/MB selection into one function

#32 wleoncio closed 3 years ago
1
Reorganize internal functions

#31 wleoncio closed 3 years ago
0
Unable to view code of Binder notebook

#30 wleoncio closed 3 years ago
1
Retry URLs on Networking and PPI functions

#29 wleoncio closed 3 years ago
1
Adapt package to different types of organisms

#28 wleoncio closed 3 years ago
3
Standardize function names

#27 wleoncio opened 3 years ago
1
Replace call to boot() from Jaccard()

#26 wleoncio closed 12 months ago
2
Remove calls to KmeanOrder from notebook

#25 wleoncio opened 3 years ago
0
PPI error

#24 wleoncio closed 3 years ago
1
Networking outputs different network from hyperlink

#23 wleoncio closed 3 years ago
2
Failing TravisCI builds

#22 wleoncio closed 2 years ago
2
DIscBIO doesn't install

#21 wleoncio closed 3 years ago
1
ClustDiffGenes is generating opposite tables

#20 SystemsBiologist closed 4 years ago
3
In a big dataset that has about 1400 cells the "plotSilhouette" function is not generating any plot.

#19 SystemsBiologist closed 4 years ago
3
Adding DOI

#18 wleoncio closed 4 years ago
0
Release 1.0

#17 wleoncio closed 4 years ago
0
Bioconductor submission 0.99.8

#16 wleoncio closed 4 years ago
0
Bioconductor submission 0.99.7

#15 wleoncio closed 4 years ago
1
Freezing on DEGanalysis

#14 wleoncio closed 4 years ago
1
Bioconductor submission 0.99.6

#13 wleoncio closed 4 years ago
0
D fmod

#12 dami82 closed 4 years ago
3
D fmod

#11 dami82 closed 4 years ago
1
Bioconductor release 0.99.4

#10 wleoncio closed 4 years ago
0
Bioconductor submission 0.99.3

#9 wleoncio closed 4 years ago
0
Bioconductor submission 0.99.2

#8 wleoncio closed 4 years ago
0
Bioconductor submission 0.99.1

#7 wleoncio closed 4 years ago
0
Dfmod

#6 dami82 closed 4 years ago
0
Added issue templates

#5 wleoncio closed 4 years ago
0
[WIP] Binder support

#4 minrk closed 4 years ago
5
New vignette hangs with reduced dataset

#3 wleoncio closed 4 years ago
2
Demo data is too large for examples

#2 wleoncio closed 4 years ago
4
Some functions implicitly require clustering

#1 wleoncio closed 4 years ago
3