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openworm
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muscle_model
Model of C elegans body wall muscle based on Boyle & Cohen 2008
http://www.opensourcebrain.org/projects/muscle_model
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Updated GHA test scripts
#68
pgleeson
closed
3 months ago
0
Regenerated summary
#67
pgleeson
closed
10 months ago
0
Master->dev
#66
pgleeson
closed
1 year ago
0
Add ci
#65
pgleeson
closed
2 years ago
0
SciUnit test to reproduce additional muscle patch clamp data in the muscle model
#64
slarson
opened
7 years ago
7
Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model
#63
slarson
opened
7 years ago
8
[WIP] Add test for vclamp.m
#62
souravsingh
opened
7 years ago
4
Muscle Model Explorer - Error while loading channel files
#61
shah-n
closed
8 years ago
2
Shell script tester
#60
pgleeson
closed
8 years ago
1
Shell script tester
#59
brijeshmodi12
closed
8 years ago
0
Update SingleCompMuscle.cell.nml
#58
adrianq
closed
8 years ago
0
Updated C Code
#57
RobbySimpson
closed
8 years ago
0
Using setup.py to install dependencies
#56
pgleeson
closed
8 years ago
0
Add setup.py to install most dependencies
#55
slarson
closed
8 years ago
2
correcting q0 in trap funct
#54
borismarin
closed
8 years ago
3
Delete or archive unused branches
#53
gsarma
closed
8 years ago
1
Write PyTest tests for basic command line runs
#52
gsarma
closed
8 years ago
12
Create tests to catch performance regressions in specific functions
#51
gsarma
opened
9 years ago
0
Check for performance regressions in testing suite
#50
gsarma
opened
9 years ago
1
The same conductance for different channels in nml files
#49
VahidGh
closed
9 years ago
6
Created folder structure and README for tests
#48
gsarma
closed
9 years ago
3
Replace jnml in scripts with pynml?
#47
travs
closed
8 years ago
2
Update README.md
#46
gsarma
closed
9 years ago
1
Add jneuroML to documentation here
#45
travs
closed
9 years ago
3
Integrate the test in the test suite being run on TravisCI
#44
travs
opened
9 years ago
0
Turn the error-generating script into a SciUnit test
#43
travs
opened
9 years ago
0
Write a script that generates an overlaid image of the simulated and digitized data
#42
travs
opened
9 years ago
1
Write a script that takes the digitized figure and the simulation output and calculates the error/difference
#41
travs
opened
9 years ago
0
Digitize the figure mentioned in #31
#40
travs
closed
9 years ago
7
Document muscle_model testing framework
#39
travs
opened
9 years ago
0
Write SciUnit validation tests for muscle_model
#38
travs
opened
9 years ago
10
Write Pytest tests for muscle_model
#37
travs
closed
8 years ago
1
Write doctests for muscle_model
#36
travs
opened
9 years ago
16
Simpler travis script
#35
pgleeson
closed
9 years ago
0
Replacing NML2ChannelAnalyse.py from the BBP showcase with pyNeuroML
#34
VahidGh
closed
9 years ago
2
Draft workflow outline for validation tests
#33
travs
opened
9 years ago
0
Improve Geppetto version of muscle model
#32
slarson
opened
9 years ago
3
Define parameters for simulated experiment using jNeuroML on the command line, based on the methods that went into the figure
#31
slarson
opened
9 years ago
19
Create unit test that verifies correct I/V curve for ca_boyle NML2 channel
#30
slarson
opened
9 years ago
13
Create setup.py to install dependencies to run NeuroML2 model
#29
slarson
closed
8 years ago
7
Print out values from python / matlab implementations and compare with values from NeuroML2
#28
slarson
opened
9 years ago
8
Optional OPENWORM_HOME variable for those that don't want to use the ~/git path.
#27
rgerkin
closed
9 years ago
1
Screenshot for section 2.1 in README
#26
rgerkin
closed
9 years ago
2
Non-reliance on ~/git
#25
rgerkin
closed
9 years ago
5
Section on running ion channel simulations
#24
rayner
closed
9 years ago
0
Readme updates
#23
slarson
closed
9 years ago
0
Add a Gitter chat badge to README.md
#22
gitter-badger
closed
9 years ago
0
Plotting I-V curves
#21
VahidGh
closed
9 years ago
0
generate I-V plots for ion channels
#20
VahidGh
closed
9 years ago
12
Create iv_all.py
#19
VahidGh
closed
9 years ago
3
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