pacific-hake hake-assessment issues

pacific-hake / hake-assessment

:zap: :fish: Build the assessment document using latex and knitr

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issues

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Investigate utility of eDNA index

#1159 aaronmberger-nwfsc opened 2 weeks ago
0
Investigate day of year for weight-at-age model

#1158 kellijohnson-NOAA opened 3 months ago
0
Run model with split fleets (as areas)

#1157 cgrandin opened 8 months ago
0
Final year missing on the sampling table (table 4)

#1156 cgrandin closed 8 months ago
0
Change all instances of U.S. Shore-based to U.S. Shoreside

#1155 cgrandin opened 9 months ago
0
place disclaimer or something on SRG presentations

#1154 kellijohnson-NOAA closed 8 months ago
2
git rm .rmd presentation files that are not used

#1153 kellijohnson-NOAA closed 8 months ago
2
Figure of decision tables

#1152 kellijohnson-NOAA opened 9 months ago
2
Fix alt text when multiple instances of a png figure are added in different chunks

#1151 cgrandin opened 9 months ago
0
Modify `large_cohorts` package data variable to contain 2021 instead of 2020

#1150 cgrandin closed 8 months ago
0
Condense information for maturity, fecundity, and weight-at-age

#1149 kellijohnson-NOAA opened 9 months ago
0
Figure 8 (age comps) has 2021 cohort highlighted in top panel and 2020 in bottom.

#1148 andrew-edwards closed 8 months ago
2
Table 4 (summary of fishery sampling) only goes up to 2022, not 2023

#1147 andrew-edwards closed 8 months ago
3
Checking text and re-editing as necessary after SRG meeting

#1146 andrew-edwards closed 9 months ago
0
Fishing intensity = 100% forecast tuning

#1145 aaronmberger-nwfsc closed 9 months ago
2
feat: change the point type in squid plot based on if there is age-1 index or not

#1144 kellijohnson-NOAA closed 8 months ago
0
Trevor's typo suggestions

#1143 kellijohnson-NOAA opened 9 months ago
3
Add ticks to maturity ogive plot

#1142 cgrandin closed 9 months ago
5
Fecundity-at-age Figure 14 - not all values should be bold

#1141 andrew-edwards closed 9 months ago
1
Table 35 (retrospective parameter estimates) has a couple of errors

#1140 andrew-edwards closed 9 months ago
0
Parameter comparison table (base model; 2023 base model) 2024 relative SSB row incorrect

#1139 aaronmberger-nwfsc closed 9 months ago
2
survey fits in bridging figures don't seem to line up

#1138 aaronmberger-nwfsc closed 9 months ago
2
Survey posterior fits figure not working

#1137 aaronmberger-nwfsc closed 9 months ago
3
Figure 63 (comparison of variability of spawning biomass) didn't get updated from last year

#1136 andrew-edwards closed 9 months ago
0
Minor edits for document

#1135 andrew-edwards closed 9 months ago
0
fixes 2023 TAC values

#1134 kellijohnson-NOAA closed 9 months ago
0
Bug in forecasting

#1133 cgrandin closed 9 months ago
5
Fishery selectivity (Figure 29) does not seem correct

#1132 aaronmberger-nwfsc closed 9 months ago
0
2023 TAC is incorrect

#1131 kellijohnson-NOAA closed 9 months ago
7
2024 SRG presentations

#1130 kellijohnson-NOAA closed 9 months ago
0
Credibility intervals are separate with , rather than -- for D-M parameters

#1129 kellijohnson-NOAA closed 10 months ago
0
Shorten caption of catch-stream table so table fits on one page.

#1128 kellijohnson-NOAA closed 10 months ago
3
Do we "estimate" catch or "calculate" catch?

#1127 kellijohnson-NOAA closed 10 months ago
1
Figure 19 axes are hard to read

#1126 aaronmberger-nwfsc closed 10 months ago
0
Consider adding distribution of catchability figure to assessment document

#1125 aaronmberger-nwfsc closed 10 months ago
3
DM parameters hard to interpret

#1124 aaronmberger-nwfsc closed 10 months ago
4
Shorten verbose text in 1-page summary about new data

#1123 kellijohnson-NOAA closed 10 months ago
1
Figure 60 and 61 captions are not correct

#1122 cgrandin closed 10 months ago
3
Question - Should we make at-age tables in kilotonnes instead of tonnes?

#1121 cgrandin closed 10 months ago
5
Cosmetic - Swap order of ovary table and fecundity table (14 and 15)

#1120 cgrandin closed 10 months ago
9
Ovary samples table needs update for 2023

#1119 cgrandin closed 10 months ago
0
Cannot place two (or more) short landscape tables on one landscape page

#1118 cgrandin closed 10 months ago
2
base_model$mcmcvals$dm_weight_survey_median is incorrect

#1117 aaronmberger-nwfsc closed 10 months ago
3
Comments on the new Cohort table?

#1116 cgrandin closed 10 months ago
4
Fig. 49 Try to make legend dots smaller

#1115 cgrandin closed 10 months ago
1
Fig 39, depletion with forecasting has the CI's out of bounds (top)

#1114 cgrandin closed 10 months ago
1
Should we be using 'forecast' year biomass values or model output values for the next year

#1113 cgrandin opened 10 months ago
7
Change 2023 catch in forecast run

#1112 cgrandin closed 10 months ago
1
Figure j in exec summary and Figure 39 need forecast time series

#1111 aaronmberger-nwfsc closed 10 months ago
16
Suggest we don't break tables over two pages when not necessary

#1110 andrew-edwards closed 10 months ago
4