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projectglow
/
glow
An open-source toolkit for large-scale genomic analysis
https://projectglow.io
Apache License 2.0
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Regression on large datasets using spot instances/preemptible VMs
#405
skhalid7
closed
5 months ago
1
Writing VCF with FloatType in INFO field fails
#404
ConnorBarnhill
closed
5 months ago
4
add automated release pipeline
#403
williambrandler
closed
5 months ago
0
Fix VEP parsing failures stemming from indels
#402
bboutkov
closed
2 years ago
2
Phenotypes and Covariates not automatically filtered to match genotype table
#401
williambrandler
opened
3 years ago
0
Huge (15x-150x) performance regression in VCF parsing after release 0.2
#400
dna0ff
closed
2 years ago
13
GLOW vs REGENIE
#399
Shicheng-Guo
closed
5 months ago
1
notebooks from docs appear to be out of date
#398
williambrandler
closed
2 years ago
1
.bgz file load failure
#397
olesya13
closed
3 years ago
4
Upgrade Spark dependency from 3.0.0 to 3.1.2
#396
karenfeng
closed
3 years ago
1
Approx firth does not handle failed fit gracefully
#395
bcajes
opened
3 years ago
0
Integrating glow into pipeline
#394
linchihfan
closed
5 months ago
2
Better handling of missing phenotypes in step 1 and step 2 of GloWGR
#393
williambrandler
opened
3 years ago
0
Add top about yapfAll to building and testing notes for developers
#392
kianfar77
closed
5 months ago
0
Workaround for discordant GWAS results between Glow, Hail, and statsmodel
#391
bcajes
closed
2 years ago
10
Update regenie paper links
#390
williambrandler
closed
3 years ago
1
schema for VEP positional INFO fields incorrect for indels
#389
williambrandler
closed
2 years ago
0
Py4JJavaError: An error occurred while calling o3218.save when running the "Getting Started Demo"
#388
dberma15
closed
3 years ago
6
Release on Spark 3.1
#387
karenfeng
closed
2 years ago
2
update getting started guide
#386
williambrandler
closed
3 years ago
3
update docs README.md
#385
williambrandler
closed
3 years ago
3
Error when using expand_struct
#384
mirhendi
closed
3 years ago
2
Getting started notebooks update
#383
williambrandler
closed
3 years ago
1
add vep example
#382
williambrandler
closed
2 years ago
1
hail interoperability example
#381
williambrandler
closed
3 years ago
2
Test changed notebooks in branches
#380
karenfeng
closed
3 years ago
1
Add VEP and Hail interoperability notebooks
#379
williambrandler
closed
3 years ago
2
Better handling of spark configs
#378
bcajes
opened
3 years ago
5
Hail related enhancements
#377
bcajes
closed
3 years ago
6
update introduction and architecture diagram
#376
williambrandler
closed
3 years ago
5
Improve pipe transformer observability
#375
dmoore247
opened
3 years ago
1
Automatically test demo notebooks
#374
karenfeng
closed
3 years ago
0
Create integration test script
#373
karenfeng
closed
3 years ago
5
Error in WGR
#372
ConnorBarnhill
closed
3 years ago
3
Cannot flatten info field names containing points
#371
Hoeze
opened
3 years ago
2
nested NullType in genotypes produced in Hail interoperability function
#370
williambrandler
closed
5 months ago
6
mean_substitute minimal example in API fails with Invalid call to dataType on unresolved object, tree: lambda '3[sum]
#369
williambrandler
opened
3 years ago
0
How to read tsv?
#368
Hoeze
closed
5 months ago
3
Migrate from Bintray to Sonatype
#367
karenfeng
closed
3 years ago
1
Remove typecheck for numpy arrays
#366
kianfar77
closed
3 years ago
4
Update GloWGR documentation to fully reflect GloWGR API changes
#365
kianfar77
closed
2 years ago
5
Fix Glow version in doc
#364
dna0ff
closed
3 years ago
2
Whole Genome Regression TypeError
#363
ConnorBarnhill
closed
3 years ago
7
[Glow 1.0.0] [regression] Undefined function: 'expand_struct'
#362
dna0ff
closed
3 years ago
3
reading VCF as a streaming datasource in python
#361
williambrandler
opened
3 years ago
1
PySpark and ndarray
#360
EpiSlim
closed
5 months ago
3
Fix bgz registration
#359
henrydavidge
closed
3 years ago
2
htsjdk.samtools.util.RuntimeIOException when reading empty vcf file
#358
williambrandler
closed
3 years ago
0
Best way to do a full outer join?
#357
ConnorBarnhill
closed
3 years ago
3
Add tips to troubleshooting page
#356
karenfeng
opened
3 years ago
1
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