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proksee-project
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proksee-cmd
Repo for Proksee Cmd Line Tools
Apache License 2.0
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Visualization of split CDS in proksee.ca and multiple contigs
#84
glucksfall
closed
1 year ago
1
Add contig contamination checking to the expert assembly contigs.
#83
emarinier
opened
1 year ago
0
Updating Information for 1.0.0a6 Release
#82
emarinier
closed
1 year ago
0
Input checking and sanitization
#81
emarinier
opened
1 year ago
1
Adding Timestamps
#80
emarinier
closed
1 year ago
0
Various small fixes for v1.0.0a5
#79
emarinier
closed
1 year ago
3
Add command line option to specify the database location
#78
emarinier
closed
1 year ago
1
v1.0.0a5: Various changes to support integration with Proksee Web
#77
emarinier
closed
2 years ago
1
Merge develop into fix/config
#76
emarinier
closed
2 years ago
0
Adding config.json to MANIFEST.in
#75
emarinier
closed
2 years ago
3
Setting quast=5.0.2
#74
emarinier
closed
2 years ago
0
Add Prokka (re-created)
#73
emarinier
closed
2 years ago
0
Add Prokkka
#72
emarinier
closed
2 years ago
1
Reorganizing commands for annotate and "full".
#71
emarinier
closed
2 years ago
0
Updating for v1.0.0a3 Release
#70
emarinier
closed
2 years ago
0
Update the Assemble Tutorial
#69
emarinier
opened
2 years ago
0
Adds Basic Resource Specification
#68
emarinier
closed
2 years ago
0
Correcting Broken Links in README
#67
emarinier
closed
2 years ago
0
Adding Read File Locations to JSON Output
#66
emarinier
closed
2 years ago
0
Add RefSeq Cut-Offs to JSON File, Show Species Cut-Offs
#65
emarinier
closed
2 years ago
1
Updating .gitignore
#64
emarinier
closed
2 years ago
0
Clean up temporary files created during assembly.
#63
emarinier
closed
2 years ago
0
Updating Version for 1.0.0a2
#62
emarinier
closed
2 years ago
0
Adding the ability to specify the MASH database download path.
#61
emarinier
closed
2 years ago
2
Updating version to 1.0.0a1
#60
emarinier
closed
2 years ago
0
Updating Version to 1.0.0a1
#59
emarinier
closed
2 years ago
0
Update Version to 1.0.0-alpha and Add to Outputs
#58
emarinier
closed
3 years ago
0
Adding Apparently Missing MkDocs Documentation
#57
emarinier
closed
3 years ago
0
Add Model and Database Versions to '--version'
#56
emarinier
closed
3 years ago
0
Ml updates
#55
asahaman
closed
3 years ago
0
Remove RefSeq Masher and replace with a custom Mash solution.
#54
emarinier
closed
3 years ago
1
Removing Proksee Annotate
#53
emarinier
closed
3 years ago
0
Improves Species and Contamination Estimation
#52
emarinier
closed
3 years ago
0
Bufix output of cmd_assembly.py
#51
emarinier
closed
3 years ago
0
Updating mkdocs: merge dev/json into dev/mkdocs
#50
emarinier
closed
3 years ago
0
MkDocs Material Website
#49
emarinier
closed
3 years ago
0
Bugfix for Species Estimation
#48
emarinier
closed
3 years ago
0
Merge dev/json into develop
#47
emarinier
closed
3 years ago
2
Investigate FLASH for Proksee Assemble
#46
emarinier
opened
3 years ago
0
Adding Documentation for 1.0.0 Release
#45
emarinier
closed
3 years ago
0
Merge dev/testing into develop
#44
emarinier
closed
3 years ago
0
Dev/documentation
#43
asahaman
closed
3 years ago
2
Merge develop in dev/cmd-evaluate
#42
emarinier
closed
3 years ago
0
Merge dev/cmd-evaluate into develop
#41
emarinier
closed
3 years ago
2
Merge dev/evaluation into dev/cmd-evaluate
#40
emarinier
closed
3 years ago
0
Build Conda Environment for Release
#39
emarinier
closed
3 years ago
2
Prepare "proksee assemble" Outputs for Display in Proksee Viewer
#38
emarinier
closed
1 year ago
3
Create "proksee evaluate" Command
#37
emarinier
closed
3 years ago
3
Merge dev/evaluation into develop
#36
emarinier
closed
3 years ago
11
Merge dev/documentation into develop
#35
emarinier
closed
3 years ago
4
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