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satijalab
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azimuth
A Shiny web app for mapping datasets using Seurat v4
https://satijalab.org/azimuth
GNU General Public License v3.0
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update signac version
#188
Gesmira
closed
11 months ago
0
error with install azimuth
#187
turuilin
closed
11 months ago
6
No feature overlap between existing object and new layer data
#186
mainyanghr
opened
11 months ago
0
Version 0.5.0
#185
Gesmira
closed
11 months ago
0
Azimuth ATAC and Compatibility with Seurat v5
#184
Gesmira
closed
11 months ago
0
"SCT is not an assay present in the given object" even though it is present
#183
viktorfeketa
opened
11 months ago
3
Other species than human and mouse
#182
viktorfeketa
opened
11 months ago
0
Error in installing Azimuth
#181
dzhao98
closed
11 months ago
2
Error in curl::curl_fetch_memory(url, handle = handle)
#180
Cathy94
closed
5 months ago
1
Error in curl::curl_fetch_memory(url, handle = handle)
#179
Cathy94
closed
5 months ago
2
RunAzimuth error, Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not allowed
#178
Cathy94
opened
1 year ago
2
RunAzimuth not working with BPCells matrix
#177
mihem
opened
1 year ago
5
Inconsistency between annotation levels
#176
viktorfeketa
opened
1 year ago
0
cell labelling before or after integrating?
#175
ravelarv
opened
1 year ago
0
Azimuth prediction and mapping scores - obtaining scores for all possible cell types
#174
HarrietRB
opened
1 year ago
2
adding log normalization support
#173
Gesmira
opened
1 year ago
0
ERROR in the Function "NNTransform"
#172
WANGROUOYI
closed
1 year ago
1
Proposal: update tonsil atlas reference and include new ref in Azimuth-ATAC
#171
massonix
closed
1 year ago
2
Is there a way to filter down existing Azimuth reference to tissue/cell of interest?
#170
TabeaK2
opened
1 year ago
2
Azimuth installation error
#169
JarodMR1
closed
1 year ago
3
Update remotes spec for `SeuratDisk`
#168
mojaveazure
closed
1 year ago
1
Error in installation: BSgenome.Hsapiens.UCSC.hg38 not available
#167
ccnawrocki
closed
8 months ago
3
Error about RunAzimuth
#166
Junedays
closed
1 year ago
9
Azimuth install fails: SeuratDisk not available
#165
rhart604
closed
1 year ago
8
Reference for azimuth PBMC reference
#164
neanderthalensis
closed
8 months ago
1
How to build CITE-Seq Azimuth reference?
#163
frankligy
closed
7 months ago
1
RunAzimuth fails with tonsilref
#162
RobJackson28
closed
1 year ago
3
RunAzimuth error, Kidney dataset
#161
reshu23
closed
7 months ago
4
Results differ between App and local run
#160
seb951
opened
1 year ago
1
Certificate expired
#159
ollieeknight
closed
1 year ago
7
Error in `RunAzimuth`: meta.features' must have the same features as 'data'
#158
Zepeng-Mu
closed
1 year ago
1
TPM count matrix for Azimuth annotation
#157
seongguheo
opened
1 year ago
0
RunAzimuth() error: Error in curl::handle_setopt(handle, .list = req$options) :
#156
aaronwolf1995
closed
1 year ago
4
ValidateAzimuthReference does not recognize full namespace
#155
derrik-gratz
closed
1 year ago
4
reference for RunAzimuth()
#154
cathalgking
closed
1 year ago
17
Too many cells. Try another dataset.
#153
wang0430
closed
1 year ago
1
Using ATAC-bridge in RunAzimuth()
#152
dy-lin
closed
1 year ago
6
Files not present for ATAC mapping
#151
ollieeknight
closed
1 year ago
2
How to use my own RNA-seq as reference for "RunAzimuth"?
#150
yingsun-ucsd
closed
1 year ago
2
Error loading in metadata using LoadH5ADobs
#149
domjacri
opened
1 year ago
0
When should you specify the Assay and why does it give different results
#148
Tommy0398
opened
1 year ago
0
liver reference Zenodo link error
#147
mzz92
closed
1 year ago
3
@ChristineHOconnor since the `ConvertEnsembleToSymbol` gene is not currently exported from the seurat5 branch of Azimuth, use three colons rather than two access the function:
#146
ChristineHOconnor
closed
1 year ago
11
ConvertEnsembleToSymbol not found in Azimuth
#145
ChristineHOconnor
closed
1 year ago
6
RunAzimuth error: Error in idx[i, ] <- res[[i]][[1]]
#144
dy-lin
opened
1 year ago
7
Cannot find 'refUMAP' error in Docker
#143
athulmenon
closed
1 year ago
1
Human bone marrow reference 3rd level
#142
NoemieL
closed
1 year ago
2
making the Azimuth App work for v5 functions
#141
Gesmira
closed
1 year ago
0
General question on batches and Azimuth
#140
gsudre
opened
1 year ago
0
Inconsistencies in azimuth pbmc labels
#139
mihem
opened
1 year ago
0
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