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simroux
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VirSorter
Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
GNU General Public License v2.0
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No sequences in Predicted_viral_sequences/ files
#92
emily-ap
opened
1 month ago
4
conda shows Perl_xs_apiversion_bootcheck
#91
Nivskrishnan05
closed
1 year ago
0
I have warnings in the error file that I do not understand.
#90
ewars
opened
2 years ago
2
Missing output data
#89
xiaozhangzhang123
opened
2 years ago
1
Cannot execute wrapper..
#88
franztastic
closed
3 years ago
5
Run termination
#87
18AS
closed
3 years ago
1
Prophage regions
#86
niamhlacy
opened
3 years ago
1
error during virsorter2 run
#85
javadgh6
closed
3 years ago
1
Where to download files needed for --data-dir parameter
#84
flannsmith
opened
3 years ago
1
Split a large fasta file
#83
chenyj8
closed
3 years ago
1
Metric_files/VIRSorter_affi-contigs.tab "start-end-length" issues:
#82
ameisesophie
closed
3 years ago
5
VIRSorter_phage-signal.csv and VIRSorter_affi-contigs.csv missing, with no predicted viral sequences
#81
Handymanalan
closed
3 years ago
3
Multiple assembly files
#80
TJrogers86
closed
3 years ago
3
Update wrapper_phage_contigs_sorter_iPlant.pl for HPC and cloud running.
#79
burgsdorf
closed
3 years ago
1
VIRSorter_global-phage-signal.csv and Predicted_viral_sequences directory empty
#78
sxh1136
closed
4 years ago
6
TypeError: reduction operation 'argmax' not allowed for this dtype
#77
neptuneyt
closed
4 years ago
1
linear & circular Labeling chaos In the resulting Genebank file
#76
fangzhou233
opened
4 years ago
1
"No such file or directory" error for Contigs_prots_vs_Phage_Gene_unclustered.tab, VIRSorter_affi-contigs.csv, VIRSorter_phage-signal.csv
#75
mshamash
closed
4 years ago
5
Addressing a common problem with BioPerl installation: "Can't locate Bio/Seq.pm in @INC"
#74
deanna-kim
opened
4 years ago
6
Getting 500 Error from Zenodo data repo?
#73
maximilianpress
closed
4 years ago
3
Different number of Viral contig
#72
zhanwen-cheng
opened
4 years ago
1
Step 1 failed
#71
kks-vir
closed
4 years ago
10
Perl: symbol lookup error, Perl_xs_apiversion_bootcheck
#70
JiqiuWu
opened
4 years ago
1
Detection of eukaryotic viruses?
#69
rprops
opened
4 years ago
2
VirSorter predicts prophage that is longer than the actual contig size
#68
hoelzer
closed
4 years ago
3
Document "output_directory/logs/err" write "Error: Incomplete database file. Database building did not complete successfully".
#67
xdli009
opened
4 years ago
3
Difficulty in Understanding VIRSorter out file.
#66
Raashu911
opened
4 years ago
2
New anvi-export-gene-calls output kills virsorter_to_anvio.py
#65
jarrodscott
opened
4 years ago
1
Issue running virsorter with diamond using conda and wrapper perl script.
#64
elsherbini
closed
4 years ago
3
Step1 failed.!
#63
Raashu911
closed
4 years ago
21
Step1 failed.!
#62
Raashu911
closed
4 years ago
0
What is the meaning of parameter "--data-dir"?
#61
xdli009
opened
4 years ago
1
interpretation of Virsorter output
#60
sbeiow
opened
4 years ago
2
empty results because mga_linux_ia64 could not been executed
#59
bognabognabogna
closed
4 years ago
3
Use of uninitialized value in addition (+) (error?)
#58
jarrodscott
opened
4 years ago
10
Step 1 failed: VIRSorter_prots.fasta and VIRSorter_nett_filtered.fasta were not found
#57
asttra
opened
4 years ago
17
please check external command status
#56
EricDeveaud
opened
4 years ago
1
document version to use for external tools
#55
EricDeveaud
opened
4 years ago
0
check for all required tools at startup.
#54
EricDeveaud
opened
4 years ago
0
Step 1.3 error
#53
DNADoubleFelix
closed
4 years ago
2
Multiple errors given by the new VirSorter script
#52
genomics-pixel
closed
4 years ago
9
Backtracking to original contig name?
#51
jdwinkler-lanzatech
closed
4 years ago
3
Only one predicted viral sequence
#50
thr44pw00d
opened
4 years ago
2
Custom Phage Sequence
#49
ZarulHanifah
opened
5 years ago
1
Multiple predicted viral regions in similar area of contig.
#48
genomics-pixel
closed
4 years ago
8
Error in gene prediction
#47
Xiaojun928
opened
5 years ago
9
How to retrieve the coordinates of "viral" predicted regions
#46
genomics-pixel
closed
4 years ago
24
Outputs from Perl script and Cyverse version does not match
#45
genomics-pixel
closed
5 years ago
6
Excessively large 'err' log file when running with custom phage db (--cp flag)
#44
mshamash
closed
5 years ago
2
Custom database - How to?
#43
MeggyC
opened
5 years ago
11
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