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sims-lab
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CapCruncher
Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
https://sims-lab.github.io/CapCruncher/
GNU General Public License v3.0
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build(deps): Update snakemake requirement from <=7.32.4 to <=8.19.0
#298
dependabot[bot]
opened
1 month ago
0
build(deps): Update polars requirement from <=0.19.15 to <=1.6.0
#297
dependabot[bot]
opened
1 month ago
0
error in rule file?
#296
xiasijian
closed
2 months ago
1
build(deps): Update snakemake requirement from <=7.32.4 to <=8.16.0
#295
dependabot[bot]
closed
1 month ago
1
build(deps): Update polars requirement from <=0.19.15 to <=1.3.0
#294
dependabot[bot]
closed
1 month ago
1
build(deps): Update polars requirement from <=0.19.15 to <=1.0.0
#293
dependabot[bot]
closed
2 months ago
1
build(deps): Update pydantic requirement from <2.6.0,>2.4.0 to >2.4.0,<2.9.0
#292
dependabot[bot]
opened
3 months ago
0
build(deps): Update snakemake requirement from <=7.32.4 to <=8.14.0
#291
dependabot[bot]
closed
2 months ago
2
feat(interactions-compare-summarise): improve speed and reduce complexity of code
#290
alsmith151
closed
3 months ago
1
chore: Remove duplicate entries in bedgraph files
#289
alsmith151
closed
5 months ago
1
build(deps): Update snakemake requirement from <=7.32.4 to <=8.11.1
#288
dependabot[bot]
closed
3 months ago
2
build(deps): Update pydantic requirement from <2.6.0,>2.4.0 to >2.4.0,<2.8.0
#287
dependabot[bot]
closed
3 months ago
2
build(deps): Update polars requirement from <=0.19.15 to <=0.20.23
#286
dependabot[bot]
closed
3 months ago
1
chore(tests): add test for using the singularity container
#285
alsmith151
opened
6 months ago
0
build(deps): Update snakemake requirement from <=7.32.4 to <=8.10.4
#284
dependabot[bot]
closed
5 months ago
2
build(deps): Update polars requirement from <=0.19.15 to <=0.20.18
#283
dependabot[bot]
closed
5 months ago
2
Can't run pipeline. Problem recognizing fastq?
#282
fbleao
opened
7 months ago
1
Error in 'interactions count'
#281
martino-ugolini
opened
7 months ago
1
build(deps): Update polars requirement from <=0.19.15 to <=0.20.13
#280
dependabot[bot]
closed
6 months ago
2
build(deps): Update snakemake requirement from <=7.32.4 to <=8.5.3
#279
dependabot[bot]
closed
6 months ago
2
Docs update plotting documentation
#278
alsmith151
closed
8 months ago
1
build(deps): Update polars requirement from <=0.19.15 to <=0.20.8
#277
dependabot[bot]
closed
7 months ago
3
fix(docs): update icen documentation
#276
alsmith151
closed
8 months ago
1
Ensure no special chars in viewpoints
#275
alsmith151
closed
8 months ago
1
build(deps): Update pydantic requirement from <2.6.0,>2.4.0 to >2.4.0,<2.7.0
#274
dependabot[bot]
closed
5 months ago
2
fix(pipeline): fastqc rule uses the wrapper script
#273
alsmith151
closed
8 months ago
0
Fastqc rule fails if nodes have no internet access
#272
alsmith151
closed
8 months ago
0
build(deps): Update polars requirement from <=0.19.15 to <=0.20.7
#271
dependabot[bot]
closed
8 months ago
2
feat(pipeline): Improve error reporting
#270
alsmith151
closed
8 months ago
1
chore(CI): update CI pipeline
#269
alsmith151
closed
8 months ago
1
build(deps): Update snakemake requirement from <=7.32.4 to <=8.4.2
#268
dependabot[bot]
closed
7 months ago
8
build(deps): Update polars requirement from <=0.19.15 to <=0.20.6
#267
dependabot[bot]
closed
8 months ago
1
Can't run pipeline, multiple issues
#266
fbleao
closed
7 months ago
1
fix(deps): Updated minimum snakemake version.
#265
alsmith151
closed
9 months ago
0
fix(deps): PuLP<2.8.0
#264
alsmith151
closed
9 months ago
0
fix: install "full" capcruncher package
#263
alsmith151
closed
9 months ago
1
chore(deps): Bumped minimum capcruncher-tools version
#262
alsmith151
closed
9 months ago
1
build(deps): Update snakemake requirement from <=7.32.4 to <=8.1.3
#261
dependabot[bot]
closed
8 months ago
2
build(deps): Update polars requirement from <=0.19.15 to <=0.20.4
#260
dependabot[bot]
closed
8 months ago
2
chore(packaging): split requirements
#259
alsmith151
closed
9 months ago
1
build(deps): Update polars requirement from <=0.19.15 to <=0.20.2
#258
dependabot[bot]
closed
9 months ago
1
build(deps): Update snakemake requirement from <=7.32.4 to <=8.0.1
#257
dependabot[bot]
closed
9 months ago
1
build(deps): Update pybedtools requirement from <=0.9.0 to <=0.9.1
#256
dependabot[bot]
opened
9 months ago
2
Run CapCruncher from an apptainer (singularity) container
#255
alsmith151
opened
9 months ago
0
chore(deps):updated install
#254
alsmith151
closed
9 months ago
1
build(deps): Update polars requirement from <=0.19.15 to <=0.20.1
#253
dependabot[bot]
closed
9 months ago
1
Update requirements.txt with latest package
#252
alsmith151
closed
10 months ago
0
build(deps): Update polars requirement from <=0.19.15 to <=0.20.0
#251
dependabot[bot]
closed
10 months ago
1
fix(cis-and-trans-stats): fixes OOM error
#250
alsmith151
closed
10 months ago
1
build(deps): Update cookiecutter requirement from <=2.1.1 to <=2.5.0
#249
dependabot[bot]
closed
8 months ago
2
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