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smart-on-fhir
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cumulus-library
https://docs.smarthealthit.org/cumulus/library/
Apache License 2.0
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Added generic logging interface
#255
dogversioning
closed
4 days ago
1
When counting powersets with a secondary ID field, values less than subject limit are counted
#254
dogversioning
opened
6 days ago
0
Allow easy user override of coding system specification
#253
dogversioning
opened
1 week ago
0
Allow a study to specify a schema
#252
dogversioning
closed
1 week ago
1
Seperate databases.py into per-database files
#251
dogversioning
opened
1 week ago
0
Consider using pyarrow cursors instead of pandas cursors
#250
dogversioning
opened
1 week ago
0
Chunking sql export queries, coverage
#249
dogversioning
closed
1 week ago
1
Added import action
#248
dogversioning
closed
3 weeks ago
0
Allow for study-specific arguments
#247
dogversioning
closed
1 week ago
1
Rename StudyManifestParser
#246
dogversioning
opened
1 month ago
0
Seperated CLI actions from study_parser
#245
dogversioning
closed
1 month ago
1
Support a flat ndjson dir layout as well as a hierarchical one
#244
mikix
closed
1 month ago
1
Allow a user to get the version of a particular study from the CLI
#243
dogversioning
opened
1 month ago
0
Discussion - Schema usage
#242
dogversioning
closed
6 days ago
1
v2.2.0
#241
dogversioning
closed
1 month ago
0
Spike: design refactor of remaining modules in schema dir
#240
dogversioning
opened
1 month ago
3
Update studies to use the simpler location
#239
dogversioning
opened
1 month ago
0
Add data-metrics to list of studies
#238
mikix
closed
1 month ago
0
Replaced wildcard match with regex
#237
dogversioning
closed
1 month ago
0
fix: if a table does not exist, use an empty schema
#236
mikix
closed
1 month ago
0
Make it easier to run studies from git checkouts
#235
mikix
closed
1 month ago
2
Small CLI fixes
#234
mikix
closed
1 month ago
0
StudyConfig infrastructure
#233
dogversioning
closed
1 month ago
1
Tech Debt: Upgrade min version to 3.11
#232
dogversioning
opened
1 month ago
0
Tech Debt: On upgrade to 3.11, use stdlib toml library
#231
dogversioning
opened
1 month ago
0
Add table creation from files
#230
dogversioning
closed
2 months ago
1
Consider how to approach CodeableConcept.text
#229
mikix
opened
2 months ago
1
core: refactor medication tables to use modern denormalization
#228
mikix
closed
2 months ago
0
Core Medication tables could use a reorganization
#227
mikix
opened
2 months ago
0
Track db type for jinja templates
#226
dogversioning
closed
2 months ago
0
Move commonly used params to a config class
#225
dogversioning
opened
2 months ago
1
move db type to jinja environment
#224
dogversioning
closed
2 months ago
2
UMLS API
#223
dogversioning
closed
2 months ago
0
Consider examining "text" in race/ethnicity extensions
#222
mikix
opened
2 months ago
1
Enhancement: COMORBIDITY table in CORE "pairs two FHIR Conditions recorded for the same patient"
#221
comorbidity
opened
2 months ago
2
feat: support input database without patient extensions
#220
mikix
closed
2 months ago
0
Provide study test utilities
#219
mikix
opened
2 months ago
0
core__medicationrequest ignores rows without dosage instructions
#218
mikix
closed
2 months ago
0
SPIKE: consider async query execution for athena
#217
dogversioning
closed
6 days ago
1
SPIKE: Handling non-US Core Profile fields
#216
dogversioning
opened
2 months ago
0
core: add core__observation_component_* tables
#215
mikix
closed
2 months ago
0
Update documentation to discourage/deprecate use of base `core__observation` table for basic use cases
#214
dogversioning
opened
2 months ago
0
Improved upload error reporting
#213
dogversioning
closed
2 months ago
0
Consider removing non-profile fields from vital signs table
#212
mikix
closed
2 months ago
2
Consider renaming all the `_code_system` aliases to just `_system`
#211
mikix
opened
2 months ago
1
core: tighten up core_observation_lab and _vital_signs inclusion
#210
mikix
closed
2 months ago
1
core: fix encounter type codes
#209
mikix
closed
2 months ago
0
provide aliasing for core tables
#208
dogversioning
opened
2 months ago
0
Updated name of patient count field in stats
#207
dogversioning
closed
2 months ago
0
core: fix typo in core__encounter.serviceType_code*
#206
mikix
closed
2 months ago
3
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