issues
search
snakemake-workflows
/
dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
81
stars
37
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
may need to modify the rule mark_ duplicates
#215
user-tq
closed
1 year ago
2
fix: parenthesize combined filter expressions
#214
johanneskoester
closed
1 year ago
0
feat: handle umis
#213
FelixMoelder
closed
1 year ago
2
fix: use varlociraptor 6.0 with its new smart FDR control. This leads to improved filtration results with less false negatives
#212
johanneskoester
closed
1 year ago
0
chore(master): release 3.22.0
#211
github-actions[bot]
closed
1 year ago
1
fix: explicitly use categorical type for chi2 testing
#210
johanneskoester
closed
1 year ago
0
feat: Add datavzrd fields
#209
FelixMoelder
closed
1 year ago
0
chore(master): release 3.21.1
#208
github-actions[bot]
closed
1 year ago
1
perf: update to varlociraptor 5.10.0
#207
johanneskoester
closed
1 year ago
0
chore(master): release 3.21.0
#206
github-actions[bot]
closed
1 year ago
1
fix: properly handle complex candidate filter expressions including aux files
#205
johanneskoester
closed
1 year ago
0
fix: update .snakemake-workflow-catalog.yml
#204
charmoniumQ
closed
1 year ago
5
feat: Set excluded regions for delly
#203
FelixMoelder
closed
1 year ago
0
chore(master): release 3.20.1
#202
github-actions[bot]
closed
1 year ago
1
feat: Plot simple observations
#201
FelixMoelder
closed
1 year ago
0
perf: update to varlociraptor 5.9
#200
johanneskoester
closed
1 year ago
0
fix: properly handle missing candidate filter
#199
johanneskoester
closed
1 year ago
0
chore(master): release 3.20.0
#198
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.19.6
#197
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.19.5
#196
github-actions[bot]
closed
1 year ago
1
fix: resource download fixes (proxy support for get_vep_cache, curl deployment for download_revel)
#195
johanneskoester
closed
1 year ago
0
chore(master): release 3.19.4
#194
github-actions[bot]
closed
1 year ago
1
perf: update to varlociraptor 5.6.2
#193
johanneskoester
closed
1 year ago
0
chore(master): release 3.19.3
#192
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.19.2
#191
github-actions[bot]
closed
1 year ago
1
fix: reimplement ability to generate testcase; fix environment for tsv_to_excel rule
#190
johanneskoester
closed
1 year ago
0
perf: update to varlociraptor 5.6.1
#189
johanneskoester
closed
1 year ago
0
chore(master): release 3.19.1
#188
github-actions[bot]
closed
1 year ago
1
fix: use datavzrd 2.11
#187
johanneskoester
closed
1 year ago
0
fix: update to varlociraptor 5.4.1
#186
johanneskoester
closed
1 year ago
0
chore(master): release 3.19.0
#185
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.18.7
#184
github-actions[bot]
closed
1 year ago
1
perf: update datavzrd to 2.9
#183
johanneskoester
closed
1 year ago
0
fix: remove clinical significance duplicate
#182
FelixMoelder
closed
1 year ago
0
fix: fail for empty target regions
#181
FelixMoelder
closed
1 year ago
0
fix: Filter offtarget variants
#180
FelixMoelder
closed
1 year ago
0
chore(master): release 3.18.6
#179
github-actions[bot]
closed
1 year ago
1
perf: update to varlociraptor 5.3.3
#178
johanneskoester
closed
1 year ago
0
chore(master): release 3.18.5
#177
github-actions[bot]
closed
1 year ago
1
fix: fixed output of get_sra rule, such that specifying samples by SRR accessions should work fine again
#176
johanneskoester
closed
1 year ago
0
chore(master): release 3.18.4
#175
github-actions[bot]
closed
1 year ago
1
feat: map to pangenome with vg
#174
johanneskoester
opened
1 year ago
0
chore(master): release 3.18.3
#173
github-actions[bot]
closed
1 year ago
1
fix: fix revel score download URL
#172
johanneskoester
closed
1 year ago
0
fix: Fix empty regions bed file
#171
FelixMoelder
closed
1 year ago
0
feat: Ordering gene oncoprint rows based on annotation label
#170
FelixMoelder
closed
1 year ago
0
Revel download link does not work
#169
sci-kai
closed
1 year ago
2
fix: omit software env for some rules when checking between workflow cache
#168
johanneskoester
closed
1 year ago
0
chore(master): release 3.18.2
#167
github-actions[bot]
closed
1 year ago
1
fix: correctly filter target regions
#166
FelixMoelder
closed
1 year ago
2
Previous
Next