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snakemake-workflows
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dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
MIT License
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feat: map to pangenome with vg
#174
johanneskoester
opened
1 year ago
0
chore(master): release 3.18.3
#173
github-actions[bot]
closed
1 year ago
1
fix: fix revel score download URL
#172
johanneskoester
closed
1 year ago
0
fix: Fix empty regions bed file
#171
FelixMoelder
closed
1 year ago
0
feat: Ordering gene oncoprint rows based on annotation label
#170
FelixMoelder
closed
1 year ago
0
Revel download link does not work
#169
sci-kai
closed
1 year ago
2
fix: omit software env for some rules when checking between workflow cache
#168
johanneskoester
closed
1 year ago
0
chore(master): release 3.18.2
#167
github-actions[bot]
closed
1 year ago
1
fix: correctly filter target regions
#166
FelixMoelder
closed
1 year ago
2
chore(master): release 3.18.1
#165
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.18.0
#164
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.17.1
#163
github-actions[bot]
closed
1 year ago
1
chore(master): release 3.17.0
#162
github-actions[bot]
closed
1 year ago
1
feat: allow multiple target_regions BED files defined in config.yaml, merging them into one
#161
dlaehnemann
closed
1 year ago
1
chore(master): release 3.16.0
#160
github-actions[bot]
closed
2 years ago
1
fix: update conda envs and wrappers (if necessary) to work properly with strict priorities
#159
johanneskoester
closed
2 years ago
1
feat: add group annotation capabilities and corresponding display thereof in oncoprint views
#158
johanneskoester
closed
2 years ago
2
chore(master): release 3.15.0
#157
github-actions[bot]
closed
2 years ago
1
feat: enhance oncoprint report
#156
FelixMoelder
closed
2 years ago
0
issues with cutadapt
#155
piecrivello
opened
2 years ago
1
chore(master): release 3.14.1
#154
github-actions[bot]
closed
2 years ago
1
chore: use v1 of Snakemake github action
#153
johanneskoester
closed
2 years ago
0
fix: datavzrd related issues
#152
dlaehnemann
closed
2 years ago
0
feat: Hide columns in datavzrd report
#151
FelixMoelder
closed
2 years ago
0
chore(master): release 3.14.0
#150
github-actions[bot]
closed
2 years ago
1
feat: Remove plotdata from datavzrd template
#149
FelixMoelder
closed
2 years ago
0
feat: more informative file names
#148
christopher-schroeder
closed
1 year ago
1
chore(master): release 3.13.1
#147
github-actions[bot]
closed
2 years ago
1
fix: adjust input for datavzrd
#146
FelixMoelder
closed
2 years ago
0
chore(master): release 3.13.0
#145
github-actions[bot]
closed
2 years ago
1
feat: Improve datavzrd tables
#144
FelixMoelder
closed
2 years ago
0
chore(master): release 3.12.0
#143
github-actions[bot]
closed
2 years ago
1
fix: obtain domain for tick plots in datavzrd report from all related columns
#142
johanneskoester
closed
2 years ago
0
fix: use latest bwa wrapper to avoid an issue with mamba pulling an old r-base as picard dependency
#141
johanneskoester
closed
2 years ago
0
feat: render single sample
#140
FelixMoelder
closed
2 years ago
0
chore(master): release 3.11.0
#139
github-actions[bot]
closed
2 years ago
1
chore(master): release 3.10.2
#138
github-actions[bot]
closed
2 years ago
1
fix: defer final output determination to DAG phase
#137
johanneskoester
closed
2 years ago
0
chore(master): release 3.10.1
#136
github-actions[bot]
closed
2 years ago
1
fix: fix bug where multiple samples lead to failures during rendering of the datavzrd report
#135
johanneskoester
closed
2 years ago
1
fix: Handle multiple samples
#134
FelixMoelder
closed
2 years ago
0
chore(master): release 3.10.0
#133
github-actions[bot]
closed
2 years ago
1
feat: render scenario with yte
#132
FelixMoelder
closed
2 years ago
0
estimate TMB in tumor only variants
#131
yihancc
opened
2 years ago
0
fix: automatically calculate genomic sites covered for tumor mutational burden calculation
#130
dlaehnemann
closed
2 years ago
0
feat: plot detailed observations
#129
FelixMoelder
closed
2 years ago
0
feat: oncoprints
#128
johanneskoester
closed
2 years ago
0
fix: add report file labels, respect report stratification settings
#127
johanneskoester
closed
2 years ago
0
chore(master): release 3.9.0
#126
github-actions[bot]
closed
2 years ago
1
chore(master): release 3.8.1
#125
github-actions[bot]
closed
2 years ago
1
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