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sorgerlab
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indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
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Get article references, either just PMIDs or details
#1407
pagreene
closed
1 year ago
0
Allow enhanced author parsing
#1406
pagreene
closed
1 year ago
0
Migrate testing from nosetests to pytest
#1405
bgyori
closed
1 year ago
0
Python and pandas compatibility adjustments
#1404
bgyori
closed
1 year ago
0
indra literature id_lookup bug
#1403
Crispae
closed
3 months ago
4
Various fixes and improvements
#1402
bgyori
closed
1 year ago
0
using a identifiers.org namespace that is not embedded in INDRA
#1401
guerrerosimonl
closed
1 year ago
2
Allow extracting all Agents from Reach entities
#1400
bgyori
closed
1 year ago
0
Propagate section information from new Reach implementation
#1399
bgyori
closed
1 year ago
0
Extend INDRA for cellular communication
#1398
Siliegia
opened
1 year ago
2
Single quotes don't work for Windows
#1397
kwalcock
closed
1 year ago
1
Add optional residue/position feature to CountScorer
#1396
johnbachman
closed
1 year ago
0
Update MeSH resources and ontology
#1395
bgyori
closed
1 year ago
0
Representing fusion proteins
#1394
cthoyt
opened
1 year ago
0
Implement input API and processor for EVEX database
#1393
bgyori
opened
1 year ago
0
Improve BioPAX conversion processing and extend API
#1392
bgyori
closed
1 year ago
0
Implement client for MGI resources
#1391
bgyori
closed
1 year ago
0
Handle more UP/HGNC corner cases in BioPAX
#1390
bgyori
closed
1 year ago
0
Problem with get_biopax_stmts() with neighborhood option
#1389
devonjkohler
closed
1 year ago
2
Question about section type in REACH processor
#1388
sanyabt
closed
1 year ago
9
Patch BioGRID processsor to work with old tab2 data.
#1387
johnbachman
closed
2 years ago
0
Eliminate isa/partof ontology cycles
#1386
bgyori
closed
2 years ago
1
FamPlex resource update
#1385
bgyori
closed
2 years ago
0
Improvements in source processing
#1384
bgyori
closed
2 years ago
0
Generalize prefix separator handling in Bioregistry
#1383
bgyori
closed
2 years ago
0
Add module for interfacing with Bioregistry
#1382
bgyori
closed
2 years ago
0
Update SIGNOR processor
#1381
bgyori
closed
2 years ago
0
Add SemRep API and processor
#1380
bgyori
closed
2 years ago
0
Add xrefs endpoint using IndraOntology.get_mappings()
#1379
kkaris
closed
2 years ago
0
Fix handling of xrefs from OBO
#1378
bgyori
opened
2 years ago
2
Update Biomappings
#1377
bgyori
closed
2 years ago
0
Integrate mappings provided by MeSH to CAS
#1376
bgyori
closed
2 years ago
0
Expose refinement finding and deserialization functions
#1375
bgyori
closed
2 years ago
0
Add option for local text content DB for grounding mapping
#1374
bgyori
closed
2 years ago
0
Add EC client
#1373
cthoyt
closed
2 years ago
0
Add base assembler class
#1372
cthoyt
closed
2 years ago
2
[WIP] add FMA ontology
#1371
bgyori
opened
2 years ago
0
Pick up quantifier arguments from Eidos
#1370
bgyori
closed
2 years ago
0
Pip backtracking during install
#1369
bgyori
closed
2 years ago
3
Extend ontology with replacement relations
#1368
bgyori
closed
2 years ago
0
Add enzyme code queries to HGNC client
#1367
cthoyt
closed
2 years ago
1
Adding new source Atlas of cancer signaling network (ACSN) DB
#1366
samuelbunga
closed
2 years ago
0
Modify filter by curation
#1365
dianakolusheva
closed
2 years ago
0
Update path to Eidos JSON-LD exporter
#1364
bgyori
closed
2 years ago
0
Add source module for UbiBrowser
#1363
bgyori
closed
2 years ago
0
Add ECOTOX Knowledgebase
#1362
cthoyt
opened
2 years ago
0
Use latest MINERVA project
#1361
dianakolusheva
closed
2 years ago
0
Optimize handling split groups in refinement filter
#1360
bgyori
closed
2 years ago
0
Update path to extract from directory app with Eidos
#1359
bgyori
closed
2 years ago
0
Fix typo in get_statements_by_hash function
#1358
samuelbunga
closed
2 years ago
0
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