issues
search
sorgerlab
/
indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
http://indra.bio
BSD 2-Clause "Simplified" License
173
stars
65
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
New function: Get Substance MeSH ID's for given PMID
#1357
samuelbunga
closed
2 years ago
2
Integrate mappings from PubChem to MeSH
#1356
bgyori
closed
2 years ago
0
Function to retrieve PubMedIDs for given PubChem CID
#1355
samuelbunga
closed
2 years ago
0
Function to retrieve PubMedIDs for given PubChem CID
#1354
samuelbunga
closed
2 years ago
1
Request reach module has some problem
#1353
lyfer233
closed
2 years ago
2
Add client for COCI to get citation counts
#1352
bgyori
closed
2 years ago
0
Expand all with query parameter
#1351
kkaris
closed
2 years ago
0
Found unstandardized references while building DUB portal
#1350
cthoyt
closed
2 years ago
3
Small fix for CREEDS processor and statement I/O
#1349
cthoyt
closed
2 years ago
0
Add Biolookup client
#1348
bgyori
closed
2 years ago
0
Self-loops in IndraNet
#1347
dianakolusheva
closed
2 years ago
0
Direct/indirect paths
#1346
dianakolusheva
closed
2 years ago
0
Fix Mondo in bio ontology creation
#1345
bgyori
closed
2 years ago
1
Add wheel to CI dependencies installation
#1344
cthoyt
closed
2 years ago
2
Add PyOBO Client
#1343
cthoyt
opened
2 years ago
0
Update ChEBI resources
#1342
bgyori
closed
2 years ago
1
Handle Statement deserialization error
#1341
dianakolusheva
closed
2 years ago
0
Update Biomappings
#1340
bgyori
closed
2 years ago
3
Add PyOBO ontology loader and MGI client
#1339
cthoyt
closed
2 years ago
0
Add MGI client
#1338
cthoyt
closed
2 years ago
2
Precompile patterns from Identifiers.org
#1337
cthoyt
closed
2 years ago
1
Add CREEDS processors
#1336
cthoyt
closed
2 years ago
5
INDRA REST API problems
#1335
lyfer233
closed
2 years ago
1
Updates examples PMCID in the readme
#1334
lyfer233
closed
2 years ago
0
Improve NXML processing in REST API
#1333
bgyori
closed
2 years ago
0
INDRA REST API Bug!
#1332
lyfer233
closed
2 years ago
7
Add entries for two diseases ambiguous with genes
#1331
steppi
closed
2 years ago
0
Update HGNC entries
#1330
cthoyt
closed
2 years ago
0
Update existing Batch tags
#1329
dianakolusheva
closed
2 years ago
0
Remove rdflib requirement
#1328
bgyori
closed
2 years ago
0
Check Conversion statements in IndraNet
#1327
dianakolusheva
closed
2 years ago
0
Add some types to the BioOntology and extend resources
#1326
bgyori
closed
2 years ago
0
Add GtpActivation to indranet signed graph
#1325
dianakolusheva
closed
3 years ago
0
MeSH terms for protein families incorrectly output by PybelProcessor
#1324
cthoyt
opened
3 years ago
1
Assembling IndraNet with custom preassembly
#1323
dianakolusheva
closed
3 years ago
1
Load REACH statements in ReachProcessor
#1322
sanyabt
closed
3 years ago
2
Ontology analysis and improvements
#1321
bgyori
closed
2 years ago
0
Add module for fixing common statement invalidities
#1320
bgyori
closed
3 years ago
0
Override ECCODE pattern to validate CRoG statements
#1319
bgyori
closed
3 years ago
0
TRIPS/DRUM parser options for full-text articles
#1318
sanyabt
closed
3 years ago
1
Fix feature matrix generation in CountsScorer when not including supports evidences
#1317
johnbachman
closed
3 years ago
0
dialogue.bio generates Internal Server Error
#1316
djinnome
closed
3 years ago
3
Integrate Entrez ID mappings for non-human genes
#1315
bgyori
closed
3 years ago
0
Update testing to pass
#1314
bgyori
closed
3 years ago
0
Context and annotations added to PyBEL graph
#1313
bgyori
closed
3 years ago
0
Add LSPCI to the bio ontology
#1312
bgyori
closed
3 years ago
2
Add MONDO Client
#1311
cthoyt
closed
2 years ago
5
Improved OWL/IDO processing and handling of external ontology relations
#1310
bgyori
closed
3 years ago
0
Html assembly updates
#1309
kkaris
closed
3 years ago
2
Unify versioning of bioontology
#1308
cthoyt
closed
3 years ago
3
Previous
Next