issues
search
taxprofiler
/
taxpasta
TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
34
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Expand supported profiler docs with rendering of output files
#53
jfy133
closed
1 year ago
2
Expand supported profiler docs with rendering of output files
#52
jfy133
closed
1 year ago
0
Refactor taxid to be integer
#51
Midnighter
closed
1 year ago
1
docs: fix the links to source code
#50
Midnighter
closed
1 year ago
0
refactor: rename MALT to MEGAN6
#49
Midnighter
closed
1 year ago
0
Change copyright
#48
Midnighter
closed
1 year ago
1
Auto-generate help output for command quick reference
#47
Midnighter
closed
1 year ago
0
Duplicate taxIDs in mOTUs
#46
sofstam
opened
1 year ago
0
Rename MALT to MEGAN6
#45
jfy133
closed
1 year ago
1
feat: enable reading & writing Parquet files
#44
Midnighter
closed
1 year ago
1
Feat expose diamond
#43
Midnighter
closed
1 year ago
1
chore: enable Python 3.11
#42
Midnighter
closed
1 year ago
1
Add first draft of 'quick reference' and 'explanation' docs
#41
jfy133
closed
1 year ago
2
Add motus
#40
sofstam
closed
1 year ago
1
Add Python 3.11 to the test matrix
#39
Midnighter
closed
1 year ago
0
Make taxonomy identifiers integer always
#38
Midnighter
closed
1 year ago
1
Add parquet as output table option
#37
Midnighter
closed
1 year ago
0
Expose the diamond profiler
#36
Midnighter
closed
1 year ago
0
Create `taxpasta standardise` command
#35
Midnighter
closed
1 year ago
2
Add KrakenUniq
#34
sofstam
closed
2 years ago
1
Add KrakenUniq
#33
sofstam
closed
2 years ago
4
Add KrakenUniq to taxpasta
#32
sofstam
closed
2 years ago
0
Add MALT-rma2info profile
#31
maxibor
closed
2 years ago
2
Add Diamond
#30
maxibor
closed
2 years ago
2
Feature: add a CLI and implement the merge command
#29
Midnighter
closed
2 years ago
10
Refactor profilers
#28
Midnighter
closed
2 years ago
0
Metaphlan new PR
#27
maxibor
closed
2 years ago
0
Add kaiju profiler
#26
sofstam
closed
2 years ago
0
Add centrifuge classifier
#25
sofstam
closed
2 years ago
3
Add support for kaiju-mergeOutputs
#24
jfy133
closed
2 years ago
0
Add bracken
#23
Midnighter
closed
2 years ago
2
Add tests
#22
maxibor
closed
2 years ago
2
Add metaphlan taxonomic profiler application
#21
maxibor
closed
2 years ago
11
Add optional kraken columns
#20
Midnighter
closed
2 years ago
0
docs: add description for contributing
#19
Midnighter
closed
2 years ago
1
Support tool: KrakenUniq
#18
jfy133
closed
2 years ago
0
Support tool: bracken
#17
jfy133
closed
2 years ago
0
Support tool: mOTUs
#16
jfy133
closed
1 year ago
0
Add support for new metagenomic tool: MALT
#15
maxibor
closed
2 years ago
2
Support tool: MetaPhlAn3
#14
jfy133
closed
2 years ago
2
Support tool: MALT/MEGAN
#13
jfy133
closed
2 years ago
0
Support tool: centrifuge
#12
jfy133
closed
2 years ago
1
Support tool: DIAMOND
#11
jfy133
closed
2 years ago
0
Support tool: kaiju
#10
jfy133
closed
2 years ago
0
Support tool: Kraken2
#9
jfy133
closed
2 years ago
1
Add support for new metagenomic tool: metaphlan3
#8
maxibor
closed
2 years ago
0
Documentation: add workflow for adding new profiler
#7
jfy133
closed
2 years ago
0
New Functionality: merge
#6
jfy133
closed
2 years ago
1
Output format: long (tidy) Taxon Table
#5
jfy133
closed
2 years ago
0
Output format: Wide "Taxon Table"
#4
jfy133
closed
2 years ago
0
Previous
Next