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tseemann
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prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
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How to create a local (custom) database with a multifasta DNA sequence file in Prokka?
#610
Felipedb02
opened
2 years ago
0
Unnamed/uncharacterized genes are not annotated as expected
#609
ReganDM
opened
2 years ago
0
prokka install issue with M1 mac processor using homebrew - miniforge
#608
beherrm
opened
2 years ago
7
Running prokka-genbank_to_fasta_db on new genbank format
#607
emmannaemeka
opened
2 years ago
1
Where to obtain gene length from reference sequences?
#606
miguelsemedobb
closed
2 years ago
0
usegenus but no genus
#605
EllistonV
opened
2 years ago
0
prokka signalp
#604
Gao-Lei-Xinjiang
opened
2 years ago
0
strange characters in intermediate files lead to failure in generating gbf output
#603
Yasana1990
opened
2 years ago
0
Manual installation of database
#602
Bibi888
opened
2 years ago
0
Typo in The Core (BLAST+) Databases section
#601
clf-bio
opened
2 years ago
0
Unusually high ncRNA detected on same contig & coordinate - Archea
#600
naturepoker
opened
2 years ago
0
prokka setup db
#599
annavet
opened
2 years ago
2
Bio::SearchIO: hmmer3 cannot be found
#598
yzhzu
opened
2 years ago
6
Cannot find annotations for viral genomes
#597
stitam
opened
2 years ago
0
Can not run genus specific database
#596
Aravindphoenix
opened
2 years ago
1
gbff files
#595
rfarouni
opened
2 years ago
0
perl: symbol lookup error Perl_xs_apiversion_bootcheck
#594
sql647
opened
2 years ago
0
bioperl v1.7.8 kills the prokka 🐿🔫
#593
lskatz
opened
3 years ago
1
gene in faa and ffn starts with different amino acid.
#592
lijierr
opened
3 years ago
0
rna and CDS overlapped with no --cdsrnaolap set
#591
lijierr
opened
3 years ago
0
Update Core Database
#590
termithorbor
opened
3 years ago
0
[question] Can I train prodigals on several good quality genomes instead of just one?
#589
avilaHugo
closed
2 years ago
0
conda version update
#588
Hocnonsense
opened
3 years ago
0
Conda installation problem
#587
RedSnail
opened
3 years ago
0
Prokka runing error: Could not run command: cat, parallel, blastp
#586
liweicheng0011
opened
3 years ago
5
Providing multiple .gbk's to --proteins option
#585
7PintsOfCherryGarcia
closed
3 years ago
1
format issue with gff files
#584
khemlalnirmalkar
opened
3 years ago
0
where is contigs.fa
#583
ryao-mdanderson
opened
3 years ago
1
Four extra unexpected output files with prefix 'protein.XXX'....
#582
RunJiaJi
closed
2 years ago
2
Prokka annotated gene-protein database
#581
Lenus-sun
opened
3 years ago
0
prokka-uniprot_to_fasta_db is not working
#580
PB-Shinde
opened
3 years ago
0
How long time is needed for running samples using new created HMM Databases?
#579
rickyalfaray
opened
3 years ago
0
Sequin retired
#578
juliadouglasf
opened
3 years ago
0
error of minced to run prokka
#577
huiluocao
opened
3 years ago
3
prokka output files for gene quantification
#576
khemlalnirmalkar
closed
3 years ago
6
Is there a script to convert a gbk back to gff ?
#575
avilaHugo
closed
3 years ago
2
[Feature Request] Prokka to handle GFF as input into --proteins argument
#574
jolespin
opened
3 years ago
0
Is prokka could run in blast v2.10 ?
#573
TianZonglin
opened
3 years ago
2
Prokka needs makeblastdb 2.2 or higher...
#572
pmitev
opened
3 years ago
1
I want to reopen this issue: "Issue with annotating CDS/ blast step #367 "
#571
LRT-14
opened
3 years ago
2
Fix a typo in README.md
#570
sixvable
opened
3 years ago
0
what's the default virus database
#569
zhaoxvwahaha
opened
3 years ago
0
Retrieving additional uniprot codes
#568
gundizalv
opened
3 years ago
0
problem with fasta header starting with '>0 '
#567
gtonkinhill
opened
3 years ago
0
Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module)
#566
ramnageena11
opened
3 years ago
19
Updating prokka IS, AMR database
#565
mingjuhao
opened
3 years ago
0
Could not run command: cat prokka
#564
AlonsoFelipeRuiz
opened
3 years ago
2
Temp files are not removed when PROKKA finishes
#563
ireneortega
closed
3 years ago
1
A very large gene does not get annotated
#562
AnRibo
closed
3 years ago
4
Parallel version detection
#561
ole-tange
opened
3 years ago
1
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