issues
search
twolinin
/
longphase
GNU General Public License v3.0
98
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
obtaining status of all 28M CpGs
#33
ilivyatan
closed
6 months ago
2
Clarify license for Longphase
#32
ilevantis
closed
6 months ago
2
Is there an option to supply a bed file with particular regions for phasing ?
#31
ilivyatan
opened
8 months ago
2
output vcf files from phasing contain many repetitive header lines
#30
ilivyatan
opened
8 months ago
11
Very few SV can be phased
#29
tgong1
closed
9 months ago
5
haplotag --log
#28
bsb2014
closed
11 months ago
13
No FORMAT/PS description in header in SV output VCF
#27
tgong1
closed
10 months ago
3
"Buffer to small for input line lengths"
#26
vyx-lucy-kaplun
closed
3 months ago
4
Question: calculating phaseblock N50 and switch error
#25
zhengzhenxian
closed
1 year ago
2
[Enhancement] Longphase Docker image
#24
tuannguyen8390
closed
3 months ago
0
Phasing SVs without --report_readid
#23
agolicz
opened
1 year ago
1
empty output
#22
ChannieJ
opened
1 year ago
1
[Question] Co-phase SNP from Illumina and SV from ONT
#21
tgong1
closed
1 year ago
5
Duplicate lines found in haplotag result
#20
btrainee
closed
3 months ago
2
feature request: estimated phasing quality
#19
jts
closed
3 months ago
4
reference required when in ONT mode?
#18
jts
closed
1 year ago
3
terminate called after throwing an instance of 'std::out_of_range'
#17
MichelMoser
opened
2 years ago
2
LongPhase Phase out-of-range issue
#16
zhengzhenxian
closed
3 months ago
2
[Question] Using pre-phased information for regions with low support reads
#15
tuannguyen8390
closed
2 years ago
2
conda release?
#14
davidebolo1993
closed
2 years ago
2
Applying to contigs or chromosome-level scaffolds
#13
OZTaekOppa
closed
3 months ago
25
Output HP-specific read names [Feature request]
#12
davidebolo1993
closed
2 years ago
7
Population-scale co-phasing of SVs & SNPs
#11
tuannguyen8390
opened
2 years ago
6
Illumina-corrected ONT
#10
GuillaumeHolley
closed
2 years ago
8
Combine illumina and ONT reads in phasing
#9
ramesh8v
opened
2 years ago
1
Small variants (1-2bp insertions and deletion) are not phased
#8
vyx-lucy-kaplun
closed
10 months ago
3
Suggestion: Address README to accomodate for Sniffles 2
#7
tuannguyen8390
closed
2 years ago
2
Write a haplotagged BAM
#6
cjw85
closed
10 months ago
2
Support for other SNPcaller
#5
tuannguyen8390
closed
2 years ago
10
is it possible to parse SNP call sets produced other than deepvariant?
#4
yekaizhou
closed
2 years ago
5
writeResult ... Segmentation fault (core dumped)
#3
yekaizhou
closed
2 years ago
6
./longPhase: error while loading shared libraries: libdeflate.so.0: cannot open shared object file: No such file or directory
#2
yekaizhou
closed
2 years ago
3
Update readme for detailed explanation
#1
ythuang0522
closed
2 years ago
0
Previous