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wdecoster
/
chopper
MIT License
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WIP: Added the option to output contaminant reads to file
#44
SteampunkIslande
opened
2 weeks ago
2
Question: HiFi adapters
#43
diegomics
closed
2 months ago
2
The package version for the 0.9.0 tag still says 0.8.0
#42
akesandgren
opened
2 months ago
2
Cannot.Get.ChopperToRun
#41
dechavezvPUCE
opened
2 months ago
1
Conda missing package for Mac M3
#40
luigallucci
opened
3 months ago
4
--contam ：Filter contaminants against a fasta
#39
zhangguoxuan880
closed
3 months ago
4
Cannot use either wget, conda, or mamba to install chopper
#38
Chatchamew
opened
4 months ago
7
chopper v0.8.0 GLIBC_2.XX not found
#36
mlhoggard
closed
5 months ago
2
minimap2 preset for `--contam`
#35
FatYuanBao
closed
4 months ago
9
add gzip/xz/bzip2 support for input
#34
sharkLoc
closed
6 months ago
6
add gzip/xz/bzip2 support for input
#33
sharkLoc
closed
6 months ago
3
enhance -i performace
#32
JMencius
closed
6 months ago
1
confuse problem
#31
lihaicheng7003
closed
6 months ago
10
Add GC content parameter --mingc --maxgc
#30
JMencius
closed
7 months ago
8
Add straightforward --input
#29
JMencius
closed
7 months ago
13
Instatlation issue
#28
NaveenKumar56
closed
7 months ago
2
chopper with bam files
#27
selmapichot
closed
7 months ago
1
Make use of faster preset and multithreaded minimap2
#26
Ge0rges
closed
8 months ago
8
Help with --contam parameter
#25
NikoLichi
closed
9 months ago
1
Not working on M2 Mac
#24
stachyris
closed
10 months ago
6
Compiled binary for aarch64. Operational
#23
ImagoXV
closed
10 months ago
2
Not running on aarch64
#22
ImagoXV
closed
10 months ago
11
Issue in Installation
#21
SelfShubham
closed
10 months ago
7
Recommended defaults?
#20
jolespin
closed
8 months ago
5
missing ".with_cigar()" in Aligner?
#19
wchengt
closed
1 year ago
7
Give minimap more threads when available.
#18
Ge0rges
closed
8 months ago
4
Add --inverse setting like grep -v to output filtered-out reads
#17
jelber2
closed
1 year ago
2
Nanopore barcode/adapter detection
#16
Ge0rges
closed
1 year ago
2
Cannot Download Chopper
#15
paopaoch
closed
1 year ago
4
Filter out reads marked as contaminants?
#14
Ge0rges
closed
1 year ago
1
Chopper aarch64 support
#13
leiste375
closed
1 year ago
1
/lib64/libc.so.6 issue
#12
mianlee
closed
11 months ago
5
Configure global thread pool; use atomics instead of mutex
#11
jvkersch
closed
1 year ago
2
error: Found argument 'file.fastq' which wasn't expected, or isn't valid in this context
#10
dgslos
closed
7 months ago
8
sequencing_summary.txt feature
#9
kenneditodd
closed
1 year ago
1
Missing libraries of chopper
#8
MohammadAliAmir
closed
1 year ago
9
generation of a log file?
#7
brittanycronk
closed
1 year ago
6
Version
#6
tnn111
closed
1 year ago
2
Installation instructions
#5
kim-judge
closed
1 year ago
2
glibc
#4
colindaven
closed
1 year ago
4
Q score interpretation same or slightly different compared to guppy
#3
gwl2
closed
1 year ago
1
Filtering by timestamps
#2
jodjo86
opened
1 year ago
1
Adding nanolyse
#1
wdecoster
closed
2 years ago
0
Suggestion
#37
Potatoconomy
opened
3 years ago
3