zjshi gt-pro issues - Githubissues

zjshi / gt-pro

MIT License

23 stars 7 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

GT_pro optimize terminate called after throwing an instance of 'std::length_error' what(): vector::_M_default_append

#60 HaimAshk opened 8 months ago
0
Extract sck-mer sequences

#59 KingsRoad opened 9 months ago
0
Segmentation fault when run gt-pro build

#58 alienzj opened 10 months ago
1
GT-Pro genotype fails on reads with ambiguous bases other than "N"

#57 bsmith89 opened 1 year ago
0
`GT_Pro parse` => IndexError: string index out of range

#56 nick-youngblut opened 1 year ago
1
support paired-end reads?

#55 nick-youngblut closed 1 year ago
2
`assert os.path.isdir(in_dir)` => no helpful error message

#54 nick-youngblut opened 1 year ago
2
Add conda env, Github Actions CI, and VS Code devcontainer

#53 nick-youngblut closed 1 year ago
2
MUMmer4 output reformatting code

#52 nick-youngblut closed 1 year ago
5
list dependency versions

#51 nick-youngblut closed 1 year ago
5
Optimize.py does not allow for outdir specification

#50 sophiejwalton opened 1 year ago
3
0 SNPs reported for longer reads (undocumented maximum read length?)

#49 bsmith89 opened 1 year ago
8
Error writing file (cl 1067) seems to be result of g++ version

#48 bsmith89 closed 1 year ago
2
Optimize database runs but does not produce any ouputs

#47 thapasz closed 1 year ago
1
build database

#46 Alice-yyt opened 2 years ago
13
GT-pro optimize issues

#45 wangbaikui closed 2 years ago
7
GT-pro optimize returned Error

#44 boaty closed 2 years ago
9
Build customize database problem

#43 wjj666 closed 2 years ago
25
Error writing output xxx_gtpro__20190723_881species.tsv.gz cl 1067

#42 yejunbin closed 2 years ago
5
GT-pro build Error : Multispecies kmers present in input

#41 majunyeong closed 2 years ago
3
Can't download resources - ERROR 403: Forbidden

#40 LeCray closed 3 years ago
1
verify if specific SNP/gene is in database

#39 ramiroricardo closed 2 years ago
1
conda?

#38 wwood opened 3 years ago
2
Possible to create custom databases?

#37 wwood closed 3 years ago
1
%{in} not using just base name

#36 nick-youngblut closed 3 years ago
1
gtp_parse.py output columns

#35 nick-youngblut closed 3 years ago
4
Assertion `db_data != MAP_FAILED' failed

#34 nick-youngblut closed 4 years ago
1
gtp_parse.py error

#33 snayfach closed 3 years ago
1
aws tools

#32 snayfach closed 3 years ago
2
Boris/autoconf ram

#31 boris-dimitrov closed 4 years ago
0
reword canonical orientation section

#30 boris-dimitrov closed 4 years ago
0
add section Canonical Orientation

#29 boris-dimitrov closed 4 years ago
0
streamline output naming, more detailed -h usage, fix mac os x build

#28 boris-dimitrov closed 4 years ago
0
refactor multithreading code for readability and gzip performance

#27 boris-dimitrov closed 4 years ago
0
handle compressed input

#26 boris-dimitrov closed 4 years ago
0
grammar

#25 boris-dimitrov closed 4 years ago
0
query engine algorithm, data structures, and performance measurements

#24 boris-dimitrov closed 4 years ago
0
support streaming stdio

#23 boris-dimitrov closed 4 years ago
0
contain error damage to the respective input file, enforce FASTQ format

#22 boris-dimitrov closed 4 years ago
5
now multithreading works even for a single sample

#21 boris-dimitrov closed 4 years ago
1
build DB with virtual SNPs

#20 boris-dimitrov closed 4 years ago
0
build DB with virtual SNPs

#19 boris-dimitrov closed 4 years ago
0
bugfix: make sure to output last SNP count for each sample

#18 boris-dimitrov closed 4 years ago
0
prepare for open source release

#17 boris-dimitrov closed 4 years ago
0
store and query kmers in a canonical orientation

#16 boris-dimitrov closed 4 years ago
0
build db with virtual SNPs

#15 boris-dimitrov closed 4 years ago
0
add second input to sckmer builddb (monospecific SNPs whitelists)

#14 boris-dimitrov closed 4 years ago
0
make sure to output the last SNP for each input file

#13 boris-dimitrov closed 3 years ago
2
reduce RAM requirement and DB size >5x

#12 boris-dimitrov closed 5 years ago
0
Boris/2019 03 18

#11 boris-dimitrov closed 5 years ago
0