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zjshi
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gt-pro
MIT License
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new environment run
#62
AlsoATraveler
opened
3 weeks ago
0
lmer_index and mmer_bloom
#61
AlsoATraveler
opened
4 weeks ago
0
GT_pro optimize terminate called after throwing an instance of 'std::length_error' what(): vector::_M_default_append
#60
HaimAshk
opened
10 months ago
0
Extract sck-mer sequences
#59
KingsRoad
opened
11 months ago
0
Segmentation fault when run gt-pro build
#58
alienzj
opened
12 months ago
1
GT-Pro genotype fails on reads with ambiguous bases other than "N"
#57
bsmith89
opened
1 year ago
0
`GT_Pro parse` => IndexError: string index out of range
#56
nick-youngblut
opened
1 year ago
1
support paired-end reads?
#55
nick-youngblut
closed
1 year ago
2
`assert os.path.isdir(in_dir)` => no helpful error message
#54
nick-youngblut
opened
1 year ago
2
Add conda env, Github Actions CI, and VS Code devcontainer
#53
nick-youngblut
closed
1 year ago
2
MUMmer4 output reformatting code
#52
nick-youngblut
closed
1 year ago
5
list dependency versions
#51
nick-youngblut
closed
1 year ago
5
Optimize.py does not allow for outdir specification
#50
sophiejwalton
opened
1 year ago
3
0 SNPs reported for longer reads (undocumented maximum read length?)
#49
bsmith89
opened
1 year ago
8
Error writing file (cl 1067) seems to be result of g++ version
#48
bsmith89
closed
1 year ago
2
Optimize database runs but does not produce any ouputs
#47
thapasz
closed
1 year ago
1
build database
#46
Alice-yyt
opened
2 years ago
13
GT-pro optimize issues
#45
wangbaikui
closed
2 years ago
7
GT-pro optimize returned Error
#44
boaty
closed
2 years ago
9
Build customize database problem
#43
wjj666
closed
2 years ago
25
Error writing output xxx_gtpro__20190723_881species.tsv.gz cl 1067
#42
yejunbin
closed
2 years ago
5
GT-pro build Error : Multispecies kmers present in input
#41
majunyeong
closed
2 years ago
3
Can't download resources - ERROR 403: Forbidden
#40
LeCray
closed
3 years ago
1
verify if specific SNP/gene is in database
#39
ramiroricardo
closed
2 years ago
1
conda?
#38
wwood
opened
4 years ago
2
Possible to create custom databases?
#37
wwood
closed
3 years ago
1
%{in} not using just base name
#36
nick-youngblut
closed
3 years ago
1
gtp_parse.py output columns
#35
nick-youngblut
closed
3 years ago
4
Assertion `db_data != MAP_FAILED' failed
#34
nick-youngblut
closed
4 years ago
1
gtp_parse.py error
#33
snayfach
closed
3 years ago
1
aws tools
#32
snayfach
closed
3 years ago
2
Boris/autoconf ram
#31
boris-dimitrov
closed
5 years ago
0
reword canonical orientation section
#30
boris-dimitrov
closed
5 years ago
0
add section Canonical Orientation
#29
boris-dimitrov
closed
5 years ago
0
streamline output naming, more detailed -h usage, fix mac os x build
#28
boris-dimitrov
closed
5 years ago
0
refactor multithreading code for readability and gzip performance
#27
boris-dimitrov
closed
5 years ago
0
handle compressed input
#26
boris-dimitrov
closed
5 years ago
0
grammar
#25
boris-dimitrov
closed
5 years ago
0
query engine algorithm, data structures, and performance measurements
#24
boris-dimitrov
closed
5 years ago
0
support streaming stdio
#23
boris-dimitrov
closed
5 years ago
0
contain error damage to the respective input file, enforce FASTQ format
#22
boris-dimitrov
closed
5 years ago
5
now multithreading works even for a single sample
#21
boris-dimitrov
closed
5 years ago
1
build DB with virtual SNPs
#20
boris-dimitrov
closed
5 years ago
0
build DB with virtual SNPs
#19
boris-dimitrov
closed
5 years ago
0
bugfix: make sure to output last SNP count for each sample
#18
boris-dimitrov
closed
5 years ago
0
prepare for open source release
#17
boris-dimitrov
closed
5 years ago
0
store and query kmers in a canonical orientation
#16
boris-dimitrov
closed
5 years ago
0
build db with virtual SNPs
#15
boris-dimitrov
closed
5 years ago
0
add second input to sckmer builddb (monospecific SNPs whitelists)
#14
boris-dimitrov
closed
5 years ago
0
make sure to output the last SNP for each input file
#13
boris-dimitrov
closed
3 years ago
2
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