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This is a Google Colab session with these three commands
```
pip install py-ard
```
installs version 1.…
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Hi, I’m encountering errors while running pvactools (version 4.4.1) on a SLURM-managed HPC cluster. The pipeline fails during MHC Class I predictions, specifically with NetMHCcons and MHCflurry. Below…
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Visible on OpenMW T_De_SetHla_X_Narsis_B_12 [Model: meshes/tr/x/tr_ex_hla_narsis_b12.nif] t_de_sethla_x_narsis_B_13 [Model: meshes/tr/x/tr_ex_hla_narsis_b13.nif], t_de_sethla_x_narsis_B_14 [Model: mes…
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Hi @chbe-helix，
I hope this find you well.
When trying to repeat the tutorial HLA typing results with ILMN/NA12892 sample, I got the outputfile named "assembly_graph-hla.NA12892_extracted_1_fq…
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Hi @YichengLin-lab,
While I am studying your research team's paper and trying to run code with the following command:
**python main.py --peptide VMMGLLMFS --HLA HLA-A*26:01 --num_simulations 10** …
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Hi
Thanks for all the work no VDJdb. I recently realized that one epitope (ASNENMETM) used in the Dash et al. Nature 2017 paper is annotated as restricted to H-2Kb in VDJdb, while I think it should…
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Hi,
The IMGT/HLA reference from version 3.56.0 onwards provides large files as zip files, as can be read on the [IMGT/HLA github page](https://github.com/ANHIG/IMGTHLA):
```As of Release 3.56.0, …
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Hello and thank you for your great tool! It works great on my samples. I have a question regarding one of my samples, which is ultra-pure tumor (> 90% based on ASCAT) and a chromosome 6 loss.
First…
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My script is this:
## import requested modules
from PANDORA import Target
from PANDORA import Pandora
from PANDORA import Database
from PANDORA import Template
#db = Database.load()
templat…
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Great package, but I have a question: What if I don't have label information when running "UniTCR_Testing_BindPre.py" or "UniTCR_Testing_BindPre_HLA.py" with my own data? Can I just add a 'Label' colu…