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Hello! Below, I have listed the GISAID Accession IDs of sequences that could potentially belong to the B.D.E.1.1 clade:
EPI_ISL_19497475, EPI_ISL_19497497, EPI_ISL_19497476, EPI_ISL_19497498, EPI_ISL…
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MC.16> C5622T(Orf1a:P1786L)> G28423A(Orf9b:R47H)
Query: G2890A, C12616T, G28423A
Earliest sequence: 05-31 Valencia, Valencia, Spain EPI_ISL_19270918
Latest sequence: 10-04 Dublin, Ireland EPI_ISL…
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XEC>> C19983T > T1993C, Orf1a:M1771V (A5576G = PLPro_M208V) , Orf1b:P1664S (C18457T) [Edited]
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1787b_845120.json?f_…
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MC.13> T28372C(Orf9b:V30A)
Query: C7113T, C10681T, A28363C
07-02 San Joaquin, California, USA EPI_ISL_19304613
10-09 New York, USA EPI_ISL_19500166
US 63(5 not on GISAID, 1 without accessible qu…
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LB.1.3> G25947A, C27230T(Orf6:T10I)> C12854T(Orf1a:P4197S)> T5734C, T15003C, C25276T> del22116-22118(S:N185del, F186I)
Query: T5734C, T15003C, C25276T, del22115
Alternative query: T5734C, T15003C,…
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Transferred from sars-cov-2-variants/lineage-proposals#2173.
## XEC> G2060A(Orf1a:A599T)> G28378T(Orf9b:R32L)
Query: G2060A, G28378T, -A11983T,-C18687T, -G25234T,-C27944T
("-"s are added to remov…
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tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_60f5_b40c10.json?f_userOrO…
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Transferred from sars-cov-2-variants/lineage-proposals#2026
KP.3.1.1> C1441T> A26760C(M:I80L), G28423C(Orf9b:R47P)
Query: A26760C, G28423C
Earliest sequence: 07-22 New York City, New York, USA …
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### 🐛 Describe the bug
Code for reproducing the problem
```
import torch
model_type = "DPT_Large"
device = torch.device("cuda") if torch.cuda.is_available() else torch.device("cpu")
model …
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Transferred from sars-cov-2-variants/lineage-proposals#2025
KP.2.3> C28714T> T7438C> T18438C> A25983T(Orf3d-2:K6*)
Query: C8293T, T18438C, A25983T
Query for sequences without T18438C: -T18438C, A25…