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Hello I have seen that it is not possible to install RGI with python 3.9 or higher because of a dependency issue with samtools that is pinned at 1.9.
What is the reason that samtools is pinned at su…
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When running `conda env create -f environment.yml` I got this error:
```
Collecting package metadata (repodata.json): done
Solving environment: failed
ResolvePackageNotFound:
- samtools==1.19…
arusa updated
2 weeks ago
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### Description of feature
Would it be possible to add contig inclusion/exlcusion based on config cfr Mosdepth module?
```
include_contigs:
- "chr*"
exclude_contigs:
- "*_alt"
…
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Hi all, I got an interesting and unexpected error.
Unfortunately, I can not retrieve the bam file to see what it is about:
```bash
samtools sort: failed to read header from "-"
```
the log:
```b…
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### Description of feature
It looks like several of the samtools modules can be switched to nf-core versions
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I've been using bcftools with Google Cloud Storage support, and it would be very useful to be able to pass verbosity into htslib in order to understand how the http requests are working.
It seems …
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Hello, I am trying to run sprint main, but at some point I get the error below:
home/k/korinagk/.conda/envs/runSPRINT/bin/samtools: symbol lookup error: /lib64/libncurses.so.5: undefined symbol: _…
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### Description of the bug
Experiencing 137 on samtools sort, after talking with slack community and seqeria, seems to be related to [this](https://github.com/nf-core/methylseq/pull/330)
### Command…
bc2zb updated
3 weeks ago
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Hi,
I am trying to run estimateDamage.pl
It runs the initial checks and everything is okay but then it gives an error that I ma unable to solve. Can someone please help
It keeps giving me error…
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Essentially we need to add to all the environment.ymls
```yml
channels:
- conda-forge
- bioconda
dependencies:
# renovate: datasource=conda depName=bioconda/bwa
- bwa=0.7.18
# renova…