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I want to install spacemake on mac, but I noticed that bcl2fastq2 seems to only run on Linux. Could it install on Macos?
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Simulate, or generate from real data, a reference distribution of (a) depth and (b) read balance on X and Y vs autosomes for (where appropriate):
- XX
- XY
- X0
- XXY
- XYY
- XXX
- XXXY
- XXXX
- XXX…
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Further to [cgat-core #177](https://github.com/cgat-developers/cgat-core/issues/177) I'm still having trouble installing `cgat` on my system.
**NB** I've read the install instructions and have seen…
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
…
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# Issue Report
## Please describe the issue:
Gzip is, by far, the most commonly used format to compress sequencing data, including fastq files generated by your platform. gzip files are/were pro…
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## Bug report
Nextflow does not appear to be able to find the correct Python3 in my HPC environment. I first discovered this when trying to run a Python script in my workflow using a shebang in th…
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## **Describe the bug**
Hi team,
My submission gets stuck at the step "2020-09-xx 10:57:34,626|caper.cromwell_workflow_monitor|INFO| Task: id=ee393982-c762-4e1f-aba5-df9c37d17119, task=atac.read_g…
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### Description of bug
Myself and the nf-core/taxprofiler team were testing ganon 2.0 with the newly merged ganon MultiQC module as in MultiQC v1.24.1.
Despite the new log file being relatively si…
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### Description of the bug
After downloading the singularity images with `nf-core download demultiplex`, nextflow still attempts to download the bclconvert singularity image (similar problems occur w…
Aratz updated
3 months ago