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When running example control file, the Glimmer extract stage fails because the following files are not produced:
- MMAP_example.glimmer.detail
- MMAP_example.glimmer.predict
However, glimmer extract …
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If there is a better forum for this question please let me know. Also I'm relatively new to Clojure, so apologies in advance.
Minimal example yaml file (the actual files I'm dealing with are large…
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### Prerequisites
+ [x] Have you read [Feedback](https://guangchuangyu.github.io/chipseeker/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)?
* [x] ma…
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We need to renumber our reference sequence of an integrated viral genome from HPV18:1..7857 to HPV18:4001..7857/1..4000.
See http://pave.niaid.nih.gov/#explore/epigenetics/chip_seq_on_integrated_hpv1…
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Thanks for the great tool and your help both on and offline.
I'm curious about the decision to `fix_fasta_header` before processing the FASTA. This makes it basically impossible (as far as I can t…
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Hi there,
first of all, trycycler seems a great tool, thanks for this! Disclaimer: I am using it the first time.
What I really found extremely annoying is that `trycycler reconsile` stops after …
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Hi,
I tried your tool on one of my datasets where I got viral contigs with Vibrant then I ran VRhyme and compared the results obtained after the dereplication part before or after generating vMAGs.
…
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This describes the gathering of all the assemblies generated by Serratus into a single file.
TLDR: It's available at https://lovelywater2.s3.amazonaws.com/assembly/rdva/rdva_v0.2.fa.lz4
(updated 2…
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### Contribution guidelines
- [X] I've read the [contribution guidelines](https://github.com/squidfunk/mkdocs-material/blob/master/CONTRIBUTING.md) and wholeheartedly agree
### I've found a bug and …
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Hello!
I address you because I want to perform a little experiment using graphs. I would like to make a string graph from several similar reference genomes. Once made, I would like to convert the str…