-
Hello, I am trying to make a variant calling analysis with ONT data for Homo Sapiens. However, it is still running even though I started this analysis 6 days ago and it is still making examples. Could…
-
Hi,
I am trying some presumably accurate Nanopore reads that I have error-corrected (see https://gist.github.com/jelber2/f22c24442c34f872d8ebf073ad721476?permalink_comment_id=5058115#gistcomment-505…
-
### Description of the bug
The pipeline may already be able to handle this, but what happens if both SE and PE are available for a particular strain? In Camilo's mixed euk dataset (**_mixed.csv_**), …
-
using fmalmeida/ngs-preprocess:v2.6
nextflow should identify sequencing platform and route preprocessing to nanopore/pacbio/illumina.
```
ERROR ~ Error executing process > 'SRA_FETCH:GET_FASTQ …
-
### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04.5 LTS
### Workflow Version
v1.1.7
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
_No…
-
### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
…
-
Hello,
I am using m6ANet to detect m6A modifications in RNA and recently swapped over to the new nanopore RNA004 chemistry/kit. Because of this, my pipeline uses ONT's new basecaller, dorado, and I…
-
I am attempting to manually run natrix - just wondering where I can access the example_data folder, i.e. the example_data.csv, example_data.yaml and example amplicon datatset.
Thanks!
-
Hi, I have been trying to run the same pipeline for data coming from MinION and PacBIO in parallel. The analysis finishes with Nanopore data but with Pacbio there is an error. I here attache the syslo…
-
### Operating System
Windows 11
### Other Linux
_No response_
### Workflow Version
v2.6.1
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
v5.1.9
### CLI command run
_No…
irc47 updated
3 months ago